DRSC/TRiP Functional Genomics Resources

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Protein Alignment tbrd-2 and pbrm1

DIOPT Version :9

Sequence 1:NP_611401.2 Gene:tbrd-2 / 37207 FlyBaseID:FBgn0034423 Length:674 Species:Drosophila melanogaster
Sequence 2:XP_009304062.1 Gene:pbrm1 / 565366 ZFINID:ZDB-GENE-080926-4 Length:1627 Species:Danio rerio


Alignment Length:760 Identity:138/760 - (18%)
Similarity:252/760 - (33%) Gaps:184/760 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 LMVPTYYTVIHRPMDIGTIVKRVQNNYYKSVNEAIADFKQIISNCFLFNRSGDVVYRKGQMLEKF 128
            :..|.||.:|..|:|:.:|..|:|..||||||....|...::.|...:|..|..|::....::|.
Zfish   215 MQYPDYYAIIKEPIDLKSIAHRIQMCYYKSVNHMAKDIDLLVKNAKTYNEPGSQVFKDANTIKKV 279

  Fly   129 F-HKKL----------------RGMPSGPEVPC-----------NRDPKAVG--------RPRTN 157
            | .|||                |....|..:.|           ..|....|        ....:
Zfish   280 FAQKKLELEHSEPIKCSIRIRNRRFAHGDRLSCITTALQYGSESEEDAILTGSVHYDEVESEAES 344

  Fly   158 APSSAQTERKCRELLKKLQSITN-QTDAMTRNFFS--NKWD------------SLQK---KVDRQ 204
            ..||........::.:.::.:.| |...:...||.  ::.|            |||:   |:...
Zfish   345 IHSSMDVSNPIFQMYEAVRGVRNSQGQLLAEPFFQLPSRKDYPDYFQQISHPVSLQQIRSKMKNN 409

  Fly   205 YFKSVNEFCLHVDGCF---RKYHEPAKILYERVF---------NQPAAWCTSMNGNSSLESALNA 257
            .::||.:....::..|   ::|:.|:..:|:||.         .:........:|:|.|.|.|:.
Zfish   410 EYESVEQIDTDLNRMFENAKRYNVPSSQIYKRVLKLQHILQMKRKELTRRDDEDGDSRLSSTLSD 474

  Fly   258 ADLNELLAAAKLTVNSLMQCV--QMPGSGEPLTAKSLVETFCDTLNK------------------ 302
            ....:..:..|.|..:.|:.:  .:..:.|..|.:.|.:.|....:|                  
Zfish   475 GGSTKRKSHKKNTKKNRMKALLAAVAETREMGTGRRLCDLFMVKPSKKDYPDYYKIILEPMDMRI 539

  Fly   303 ---------------MINKMEAGQRNSP--NPSSS---------------KRQKMSPEQETD-LV 334
                           |:..|:...||:.  |...|               ||:::.|..:.| :|
Zfish   540 IEHNIRSDKYPNEDSMMEDMKLMFRNARHYNEEGSRVYNDANILEKILREKRKELGPPPDDDEIV 604

  Fly   335 QGEFKPAMELLSGNEIDNLMAVSIESSDDEAIDASMRITDADRCATQKLFAKLPTN--------A 391
            ..:.|.....:|..:...|  ..::...:|..:|....||........:|.:||:.        |
Zfish   605 SPKLKIRKSGISPKKSKYL--TPLQQKLNELYEAVKNYTDKRGRRLSTIFLRLPSRAELPDYYVA 667

  Fly   392 MKEIIHMVQQIEGFSSENCGDLSFDVKGLATDTMIMMKSAVT----KATRAHSKLKLKDMQPSEK 452
            :|:.|.|    |...|....:...||..|..|.::|..:|.|    ::......|.|..:....:
Zfish   668 IKKPIDM----EKIKSHMLANKYQDVDALVEDLVLMFNNACTYNEPESLIYKDALVLHKVLLETR 728

  Fly   453 EGLQRALQSQLVNITRMLNK--------------NRRRCG-------PLINFRNKNNTANNVVRK 496
            ..|:....:.:.::.|::.:              :..||.       |.::....:.|..|....
Zfish   729 RDLEGGDDAHVPDVARLIQELVRNLFVSVLGHQDDEGRCYSDSLAEIPAVDPNCSDKTPLNFEII 793

  Fly   497 RATAPLTAKLKPLQANVMAPQLGAGVVETHNLSDTSDDDVSAPVKLSAIGGTPMRNLPINSNPLQ 561
            ||...   |.:..:.:|...|:...:.:...|..|..:.....|:|...      .:.|.....:
Zfish   794 RANVD---KGRYRRLDVFQDQMFEVLEKARRLHRTDSEIFEDSVELQQF------FIRIRDELCK 849

  Fly   562 MQPIRSPPKLPHVVELQMSSSSSSESEMKSKSGRLSRSRSRSMSDTKLRPRSNSSASSRSNSSSS 626
            ...|...|.|.:.::   ...|..|.|.|.|       ..:...:.||:.......:.:|..:: 
Zfish   850 NGEILLTPALSYTIK---HLHSDVEKEKKEK-------LPKEYEEDKLKREEEKKEAEKSEDTA- 903

  Fly   627 SGSNAGSSSGSRSRSSSSSSSSSNNSSESNDSSDVEVVPNVPEGQ 671
                .|...|:..|:.|...|..:|.....|.  |.|.|..|..|
Zfish   904 ----GGGWQGALQRNYSQDCSFKDNMYHVGDY--VYVEPTEPNLQ 942

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tbrd-2NP_611401.2 Bromo_gcn5_like 34..136 CDD:99941 26/88 (30%)
pbrm1XP_009304062.1 Bromo_polybromo_I 45..156 CDD:99954
Bromo_polybromo_II 183..284 CDD:99948 22/68 (32%)
Bromo_polybromo_III 352..453 CDD:99951 17/100 (17%)
Bromo_polybromo_IV 488..591 CDD:99949 12/102 (12%)
Bromo_polybromo_V 626..730 CDD:99946 22/107 (21%)
Bromo_polybromo_VI 745..850 CDD:99956 15/113 (13%)
BAH_polybromo 923..1042 CDD:240068 7/22 (32%)
BAH_polybromo 1120..1238 CDD:240068
HMG 1341..1408 CDD:197700
Forkhead_N 1415..1541 CDD:254796
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.900

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