DRSC/TRiP Functional Genomics Resources

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Protein Alignment tbrd-2 and polybromo

DIOPT Version :9

Sequence 1:NP_611401.2 Gene:tbrd-2 / 37207 FlyBaseID:FBgn0034423 Length:674 Species:Drosophila melanogaster
Sequence 2:NP_651288.1 Gene:polybromo / 42954 FlyBaseID:FBgn0039227 Length:1654 Species:Drosophila melanogaster


Alignment Length:608 Identity:108/608 - (17%)
Similarity:233/608 - (38%) Gaps:132/608 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 KLHYFKKHLLDEARKKKYALDFLEPVD-----TEALMVPTYYTVIHRPMDIGTIVKRVQNNYYKS 93
            |:...:|:|:|      |:|....|::     ....:.|.||.:|..|:|:.||...::.:.|.:
  Fly   515 KILSIQKYLVD------YSLGNRRPIEMFMEKPPRKIYPDYYDIIQNPIDMNTIEHNIRTDRYAA 573

  Fly    94 VNEAIADFKQIISNCFLFNRSGDVVYRKGQMLEKFFHKKLRGMPSGPEVPCNRDP-KAVGRPRTN 157
            |.:.::|::.:.|||..:|..|..:|....:||:..::||:..|...|...::.. ..|||   .
  Fly   574 VEDVVSDYRLMFSNCRQYNEEGSNIYEDANILERALNEKLKEFPGLTEGKKSQQKYSKVGR---K 635

  Fly   158 APSSAQTER--KCRELLKKLQSITNQ-------TDAMTRNFFSNKWDSLQKKVD----RQYFKS- 208
            ..::..|||  :..|.:|:.|....:       |...:::.:.:.:|.:::.:|    .|..|. 
  Fly   636 LKTAVITERLWQFYETVKEYQEPKGKRQLSLIFTKLPSKSEYPDYYDIIREPIDMDRIAQKLKQG 700

  Fly   209 --------VNEFCLHVD-GCFRKYHEPAKILYERVFNQPAAWCTSMNGNSSLESALNAADLNELL 264
                    ..:|.|.:: .|  ||:||...:|:                             :.|
  Fly   701 AYDTLDDLAADFLLMLENAC--KYNEPDSQIYK-----------------------------DAL 734

  Fly   265 AAAKLTVNSLMQCVQMPGSGEPLTAKSLVETFCDTLNKMINKM-EAGQRNSPNPSSSKRQKMSPE 328
            ...:||: .|.|.::......|....::.|.|......:.|.. |.|:..|.:.:.      .||
  Fly   735 VLQQLTL-QLKQQLRTERDSLPDVPLAVQELFLTLFTTIYNHQDEEGRCYSDSLAE------LPE 792

  Fly   329 QETDLVQGEFKPAMELLSGNEIDNLMAVSIESSDDEAIDASMRITDADRCATQKLFAKL---PTN 390
            .:            |:..|.::..:....::...|:.....:.:...|..|..:...||   .::
  Fly   793 YD------------EIGEGPKVRGISLDLVKRRLDKGAYKRLDVYQEDIFACLERARKLSRTDSD 845

  Fly   391 AMKEIIHMVQQIEGFSSENCGD------LSFDVKGLATDTMIMMKSAVTKATRAHSKLKLKDMQP 449
            ..::.|.:.........|.|.|      |:|.::.|..|..:..:..:.:..:...:.|.|| :.
  Fly   846 IFQDSIELQTYFIRKRDELCKDTLSSSALNFSLERLMADVELCRQQKMQQEEQDQEQDKEKD-EF 909

  Fly   450 SEKEGLQRALQSQLVNITRMLNKNRRRCGPLINFRNKNNTANNV--VRKRATAPLTAKLKPLQAN 512
            :..:|....:..|:.:           .|..:..:...|...::  :.:..|:|...||  :||:
  Fly   910 NAAKGESMTINQQVFS-----------PGDYVYVQMPENKIPSICCIERLWTSPTNEKL--MQAS 961

  Fly   513 V-MAPQLGAGVVETHNLS-------DTSDDDVSAPVKLSAIGG-TPMRNLPINSNPLQMQPIRSP 568
            : :.|.      ||::::       :.....:|..:.:..:.| ..:.|:   .:.::|:|...|
  Fly   962 IFVRPH------ETYHVTTRKFLEKEVFKSSLSQTISMDKVQGMCYVMNI---KDYIKMRPENLP 1017

  Fly   569 PKLPHVVELQMSSSSSSESEMKS 591
            .|..:|.|.:.:.......::||
  Fly  1018 EKDVYVCESRYNIQGRWFKKLKS 1040

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tbrd-2NP_611401.2 Bromo_gcn5_like 34..136 CDD:99941 28/106 (26%)
polybromoNP_651288.1 Bromodomain 46..158 CDD:295360
Bromo_polybromo_II 191..294 CDD:99948
Bromo_polybromo_III 335..443 CDD:99951
Bromo_polybromo_IV 512..613 CDD:99949 26/103 (25%)
Bromo_polybromo_V 641..733 CDD:99946 19/122 (16%)
Bromo_polybromo_VI 758..867 CDD:99956 18/126 (14%)
BAH_polybromo 921..1040 CDD:240068 21/140 (15%)
BAH_polybromo 1120..1234 CDD:240068
HMG-box 1320..1375 CDD:238037
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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