DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tbrd-2 and Lpt

DIOPT Version :9

Sequence 1:NP_611401.2 Gene:tbrd-2 / 37207 FlyBaseID:FBgn0034423 Length:674 Species:Drosophila melanogaster
Sequence 2:NP_611847.2 Gene:Lpt / 37795 FlyBaseID:FBgn0263667 Length:1482 Species:Drosophila melanogaster


Alignment Length:806 Identity:149/806 - (18%)
Similarity:252/806 - (31%) Gaps:258/806 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 HPGMAGRYTNK----LHYFKKHLLDEA---------------RKKKYAL-----DFLEPVDTEAL 64
            ||.::|.....    ||:.....|.|:               ||.:.||     ..||....|||
  Fly   759 HPTLSGDMPESAPEALHWIDGVCLSESGLGMIKSLSTEIKRKRKMRQALGNGKDGQLEAAAEEAL 823

  Fly    65 --------------MVPTYYTVIHRPMDIGTIVKRVQNNYYK------SV--------NEAIADF 101
                          .:|..:|:......:..:.|:.|.|..|      ||        :|.....
  Fly   824 EKYKDGMVWDGTENAIPEGFTISINDEGVNILRKKRQRNLQKLGIGGFSVRNRGLKKDSEETTAV 888

  Fly   102 KQIISNCFLFNRSGDVVYRKGQ----------MLEKFFHKKL--------RGMPSGPEV------ 142
            .| |::....::...::.:|.:          :.|.||.|.|        ....|..|:      
  Fly   889 DQ-INSLMTMDKKKKIIRKKQKNKLIEAYPVYLQEAFFGKPLLEGGELVMADTDSSDEIDASMKV 952

  Fly   143 ---------PCNRDPKAVGRPRTNAPSSAQTERKCRELLKK-------------LQSITNQTDAM 185
                     |.|:|..||.:      |.|:|.:|.:..||.             :|:....|.. 
  Fly   953 YFTRPEGKSPANQDTLAVNK------SPAKTVKKVKAELKTENKTVFIQQMPMGIQNKNGTTPV- 1010

  Fly   186 TRNFFSNKWDSLQKKVDRQYFKSVNEFCLHVDGCFRKYHEPAKILYERVFNQPAAWCTSMNGNSS 250
                 ||.:|.||.::....|.:     .|........:.|...:...|...|:|        ..
  Fly  1011 -----SNVFDPLQAEISNTVFAN-----RHPLDALASPNVPELDMANSVSTVPSA--------EV 1057

  Fly   251 LESALNAADLNELLAAAKLTVNSLMQCVQMPGSGEPLTAKSLVETFCDTL----NKMINKMEAGQ 311
            :|..:.        .:..:.|:|.|...|:|..          :.|.:.|    |.::|..:..|
  Fly  1058 IEKPMR--------ESPAVLVDSFMVPNQLPQE----------QKFHNQLYLGGNTLVNPAQQLQ 1104

  Fly   312 RNSPNPSSSKRQKMS-------------PEQETDLVQGEFKPAMELLSGNEIDNLMAVSIESSDD 363
            .....|.::.:|.|.             ||:|..:|:    |..|.|  |......|..:...:|
  Fly  1105 FRQQAPQNANKQNMQTIMSQVVLQTEKRPEEEQKVVE----PVTETL--NAGTQKTAEKMRKDED 1163

  Fly   364 EAIDASMRITDADRCATQKLFAKLPTNAMKEIIHM----VQQIEGFSSENCGDLSFDVKGLATDT 424
            ..:.|::         :..|:|......:||:..:    .:||.......|.:........|.|.
  Fly  1164 LGLMATI---------SAVLYANTEHPNLKELFPIWNDRCKQILKRWRSLCNEKKAPFLQKAKDN 1219

  Fly   425 MIMMKSAVTKATRAHSKLKLKDMQPSEKEGLQRA------LQSQLVNITRMLNKNRRRCGPLIN- 482
                :||: :..|..:|:.:.. :|.::|.:.|.      |:....|:....|.|....|..:. 
  Fly  1220 ----RSAL-RQRREQNKIPMPP-KPQKQEEMGRVWKQPPKLKEDQPNMFVTYNGNAYDMGNYVGG 1278

  Fly   483 -----FRNKN------NTANNVVRK--------RATAPLTAKLKPLQANVMAPQLGAGVVETHNL 528
                 ..|.|      |..:|:|.|        ..||..|.|:..:...:   :|...|..|..:
  Fly  1279 SAQAASNNPNPHHVMPNVNDNLVIKATMQRTQVHTTAASTLKMTTVDNRL---ELNTAVYGTEPI 1340

  Fly   529 SDTS-----DDDVSAPVKLSA-----IGGTPMR-----NLPINSNPLQMQPIRSPPKLPHVVELQ 578
            .|..     ..:.:.|:.:.|     :|...||     |.||..|                    
  Fly  1341 GDKKLRNLLQKNSTEPMLMGANSDLFLGNDVMRLGMMQNTPITQN-------------------- 1385

  Fly   579 MSSSSSSESEMKSKSGRLSRSRSRSM-SDTKL-RPRSNSSASSRSNSSSSSGSNAGSSSGSRSRS 641
                    :.|.|.||:...|..||: .|.|| .|:..:|::....:...|....|...|.....
  Fly  1386 --------NPMLSISGKSQPSEGRSLEQDVKLGEPQEATSSAVELENVGFSDLLGGLGEGDDDDL 1442

  Fly   642 SSSSSSSSNNSSESNDSSDVEVVPNV 667
            ..|.:|...:.....:.:|.|:..||
  Fly  1443 LKSLTSEMGDDFNILEYADPELDVNV 1468

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tbrd-2NP_611401.2 Bromo_gcn5_like 34..136 CDD:99941 30/171 (18%)
LptNP_611847.2 ePHD1_KMT2C_like 109..191 CDD:277135
PHD1_KMT2C_like 205..250 CDD:276984
PHD2_KMT2C_like 252..298 CDD:276985
PHD_SF 337..392 CDD:304600
PHD4_KMT2C_like 530..578 CDD:276987
PHD5_KMT2C_like 580..625 CDD:276988
PHD6_KMT2C_like 657..707 CDD:276989
NHP6B 1101..>1237 CDD:227935 28/156 (18%)
HMG 1173..1231 CDD:197700 12/62 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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