DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cora and frmd5b

DIOPT Version :9

Sequence 1:NP_523791.2 Gene:cora / 37205 FlyBaseID:FBgn0010434 Length:1698 Species:Drosophila melanogaster
Sequence 2:XP_021333528.1 Gene:frmd5b / 569968 ZFINID:ZDB-GENE-060810-165 Length:571 Species:Danio rerio


Alignment Length:554 Identity:150/554 - (27%)
Similarity:238/554 - (42%) Gaps:94/554 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 VTLLDGSLLDVSIDRKAIGRDVINSICAGLNLIEKDYFGLTYETPTDPRTWLDLEKPVSKFFRTD 100
            |.|||.|....::.|.|.|..:...:|..|||:||||||:.:..|...|.||:..||::|..|:.
Zfish    21 VRLLDDSEYTCTVQRDAKGHWLFEQVCQHLNLLEKDYFGIRFVDPDKQRHWLEFSKPITKQMRSQ 85

  Fly   101 -TWPLTFAVKFYPPEPSQLKEDITRYHLCLQVRNDILEGRLPCTFVTHALLGSYLVQSEMGDYDA 164
             .:.:...||||||:|:.|||:||||.|.||::.|:..|||.|.....|.|.::::|:|:||||.
Zfish    86 PPYTMCLRVKFYPPDPAALKEEITRYLLFLQIKRDLYHGRLLCKSSDAATLAAFILQAEIGDYDP 150

  Fly   165 EEMPTRAYLKDFKIAPNQTAELEDKVMDLHKTH-KGQSPAEAELHYLENAKKLAMYGVDLHPAKD 228
            .:.| ..|...|:..|..:..||.::.::||:. .||||..:||::|..|:.|..||||.||.||
Zfish   151 GKHP-EGYSSKFQFFPKHSERLERRIAEIHKSELTGQSPETSELNFLRKAQTLETYGVDPHPCKD 214

  Fly   229 SEGVDIMLGVCASGLLVYRDKLRINRFAWPKILKISYKRHHFYIKIRPGEFEQYESTIGFKLANH 293
            ..|....|.....|.:|.:...||:...|.::.|:.::...|:|.....|.::...|  :.....
Zfish   215 VSGNTAFLAFTPFGFVVLQGNRRIHFLKWNEVTKLKFEAKTFHIYATHQEDQKIILT--YFAPTP 277

  Fly   294 RAAKKLWKSCVEHHTFFRL---MTPEPVSKSKMFPVFGSTYRYKGRTQAE--STNTPVDRTPPKF 353
            .|.|.|||..||:..|::.   .....||.|.:| ..||.:||.|:...|  ..:..:.|.||:.
Zfish   278 EACKHLWKCGVENQAFY
QFEKSSQVRTVSSSNLF-FKGSRFRYSGKVAKEVMEQSAKIRREPPEI 341

  Fly   354 NRTLSGARLTSRSMDALALAEKE-KVARKSSTLDH----RGDRNADGDAHSRSPIKNKKEKDADK 413
            :|   ...:.|||..::....:: .|.|......|    .|..:.....|| :|::         
Zfish   342 HR---AGMVPSRSCPSITHGPRQSSVPRTRRRAVHISIMEGLESLRDSGHS-TPVR--------- 393

  Fly   414 EAKLREKKQKEKEEKERKEREKRELEEKKKAEKAAKAALAAGAAAGAAVNGNDELNDSNKSDKSS 478
                                                          :..|.|..|.  ::.:.:.
Zfish   394 ----------------------------------------------SVSNSNSFLR--SQGNGAE 410

  Fly   479 GRRGVGIFSSGRKSKSGS--PSKDGKDKSGKDKDKEVGRLGLVVTSGLGDNQQDQNLDEAARNAA 541
            |..|...||....|.|.|  |:....|.|...:.:.        |:|..:.|::...::.::|.|
Zfish   411 GGSGTAEFSEDSYSPSDSVLPTPVSNDPSDPAQVRH--------TNGPRNIQEEGGTEQCSQNQA 467

  Fly   542 KNRGSTTPGVTRQYEYAVDNDGNTSPTRKSYTPG 575
            :.:|....|.....|       .:.||:.|...|
Zfish   468 RPQGVKPKGKRSHLE-------KSRPTQHSPEEG 494

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
coraNP_523791.2 B41 34..224 CDD:214604 77/189 (41%)
FERM_N 36..98 CDD:286467 25/61 (41%)
FERM_M 116..224 CDD:278785 44/108 (41%)
FERM_C_4_1_family 219..312 CDD:270005 28/92 (30%)
FA 323..363 CDD:285894 11/41 (27%)
PQQ_2 829..>972 CDD:290097
4_1_CTD 1612..1698 CDD:283537
frmd5bXP_021333528.1 B41 19..210 CDD:214604 77/189 (41%)
PH-like 191..294 CDD:327399 32/104 (31%)
FA 309..>343 CDD:312314 10/34 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170586167
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3530
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.740

Return to query results.
Submit another query.