DRSC/TRiP Functional Genomics Resources

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Protein Alignment cora and Epb41l4b

DIOPT Version :9

Sequence 1:NP_523791.2 Gene:cora / 37205 FlyBaseID:FBgn0010434 Length:1698 Species:Drosophila melanogaster
Sequence 2:XP_038966499.1 Gene:Epb41l4b / 500464 RGDID:1562988 Length:897 Species:Rattus norvegicus


Alignment Length:891 Identity:229/891 - (25%)
Similarity:344/891 - (38%) Gaps:229/891 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 AEIKPSAPAEPETPTKSKP--------KSSSSSHGKPAL-ARVTLLDGSLLDVSIDRKAIGRDVI 58
            :.:.|:||.....|....|        ..|:|...|..| .||.||||:.:.|.:.:.|.|:|:.
  Rat    47 SSVLPAAPGGSVFPAGGGPLLTGGAAVHISASGAAKATLYCRVFLLDGTEVSVDLPKHAKGQDLF 111

  Fly    59 NSICAGLNLIEKDYFGLTYETPTDPRTWLDLEKPVSKFFRT-DTWPLTFAVKFYPPEPSQLKEDI 122
            :.|...|:|:|.|||||.:........|||..||:.|..:. ..:.|.|.||:|..||:.|:|:.
  Rat   112 DQIVYHLDLVETDYFGLQFLDSAQVTHWLDHSKPIKKQMKVGPAYALHFRVKYYSSEPNNLREEF 176

  Fly   123 TRYHLCLQVRNDILEGRLPCTFVTHALLGSYLVQSEMGDYDAEEMPTRAYLKDFKIAPNQTAELE 187
            |||...||:|:|||.|:|.|.:.|...|.:..:|:|:|:.:..| .|...:.:|:..||||..:|
  Rat   177 TRYLFVLQLRHDILSGKLKCPYETAVELAALCLQAELGECELPE-HTPELVSEFRFIPNQTEAME 240

  Fly   188 DKVMDLHKTHKGQSPAEAELHYLENAKKLAMYGVDLHPAKDSEGVDIMLGVCASGLLVYRDKLRI 252
            ..:....|.::|:|||:|||.||..||.|.|||||:|..:..:|.:..||:..:|:|::....:|
  Rat   241 FDIFQRWKEYRGKSPAQAELSYLNKAKWLEMYGVDMHVVRGRDGCEYSLGLTPTGILIFEGANKI 305

  Fly   253 NRFAWPKILKISYKRHHFYIKIRPGEFE--QYESTIGFKLANHRAAKKLWKSCVEHHTFFRLMTP 315
            ..|.||||.|:.:|:....:.:...:.:  :.|.|..|:|.:.|..|.|||..||||.||||.||
  Rat   306 GLFFWPKITKMDFKKSKLTLVVVEDDDQGREQEHTFVFRLDSARTCKHLWKCAVEHHAFFRLRTP 370

  Fly   316 EPVSKSKM----FPVFGSTYRYKGRTQAESTN------------TPVDRTPPKFNRTLS------ 358
               |.||.    |...||.:|:.|||:.::|:            .|..|.|.:.:.|..      
  Rat   371 ---SNSKSARSDFIRLGSRFRFSGRTEYQATHGSRLRRTSTFERKPSKRYPSRRHSTFKASNPVI 432

  Fly   359 GARLTSRS--------------------------------MDALALAEKEKV------------A 379
            .|:|.|::                                :.:.||:..|::            |
  Rat   433 AAQLCSKTNPEVHNYQPQFHPNVHPSQPRWRPHSPNVSYPLPSPALSPTERLPFGLEENGGTPFA 497

  Fly   380 RKSSTLDHRGDRNADGDAHSRSPIKNKKEKDADKEAKLREKKQKEKEEK-----------ERKER 433
            .|:|...|...::     ||...:....|   :|||.||.....:...|           .....
  Rat   498 PKASGRHHHQHQH-----HSNYGLSLTLE---NKEAPLRSPNSSKALTKLSPGAPALYSEAAAHL 554

  Fly   434 EKREL-------------------EEKKKAEKAAKAALAAGAAAGAAVNGN---DELNDSNKSDK 476
            :|.||                   ||||.:||..:..|.....|. .|..|   .:|.::::.:.
  Rat   555 KKLELDTVKAAGPWPALHININKAEEKKVSEKTLQTPLLPSPVAD-HVKCNILKAQLENASRVNA 618

  Fly   477 SSGRRGVGIFSSGRKSKSGSPSKDGKDKSGKDKDKEVGRLGLVVTSGLGDNQQDQNLD------- 534
            ..|:......:..:||                                  :.||.|:.       
  Rat   619 QIGKEEPSFVNINKKS----------------------------------SLQDTNVRSPIPIRV 649

  Fly   535 EAARNAAKNRGSTTPGV---TRQYEYAVDNDGNTSPTRKSYTPGGFRYDQD---PNSRKS-GADG 592
            |||:.|.:......|.|   ||||.:.                   |.|:|   |:..:: ||..
  Rat   650 EAAQPAVEKPEIKPPRVRRLTRQYSFN-------------------RSDEDDLPPDLAEAVGATT 695

  Fly   593 QEQLSPT--SQQKKIGLAFNYAPGNENALKETAEKLKAGQLSPRTQDKLNRGQLSPKSRAKLLQD 655
            ....:.|  :.|..:.||   :|..:........::|: .|||..:...:.|.........||.|
  Rat   696 ATTTNTTMSATQVSVSLA---SPKIQQVSSPQKSEVKS-PLSPGAKSPSDHGGTFTLGPGDLLMD 756

  Fly   656 -----PLLSPTTRAKLQGSAVDAAAVPLSDSQKRS------YSPTKGPQGYSSGAPGSYKPISDP 709
                 ||..|   |.....|....:.|||...|..      |.|.|.....:..|.....|..||
  Rat   757 FTEATPLAEP---ASSPHCAHSRCSPPLSLPMKEETTGVCMYPPIKTRLIKTFPAEPMMNPFPDP 818

  Fly   710 TA---DFLESQRYNKEPGYVGPSKADVAAGLAGAAGSKKPGSPTKT 752
            .|   .|....|.||               |....|...|..||.|
  Rat   819 FATGPQFAADFRENK---------------LQCCPGQSSPLIPTAT 849

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
coraNP_523791.2 B41 34..224 CDD:214604 77/190 (41%)
FERM_N 36..98 CDD:286467 24/61 (39%)
FERM_M 116..224 CDD:278785 45/107 (42%)
FERM_C_4_1_family 219..312 CDD:270005 33/94 (35%)
FA 323..363 CDD:285894 13/61 (21%)
PQQ_2 829..>972 CDD:290097
4_1_CTD 1612..1698 CDD:283537
Epb41l4bXP_038966499.1 B41 87..277 CDD:214604 77/190 (41%)
FERM_C_NBL4_NBL5 273..366 CDD:270007 31/92 (34%)
FA 379..420 CDD:400882 11/40 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166345134
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.840

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