DRSC/TRiP Functional Genomics Resources

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Protein Alignment cora and epb41l3b

DIOPT Version :9

Sequence 1:NP_523791.2 Gene:cora / 37205 FlyBaseID:FBgn0010434 Length:1698 Species:Drosophila melanogaster
Sequence 2:NP_999977.1 Gene:epb41l3b / 407981 ZFINID:ZDB-GENE-021106-1 Length:838 Species:Danio rerio


Alignment Length:608 Identity:253/608 - (41%)
Similarity:343/608 - (56%) Gaps:92/608 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 KPSAPAEPE-TPTKSK------------PKSSSSSHGKPALAR----------VTLLDGSLLDVS 47
            |.|.|.:.| ||...:            .||.||.....||.|          :|||||:....:
Zfish    17 KASDPPKTEHTPDAHRKGQHQREEDYISQKSLSSRLSWSALGRNYRLRIMECKITLLDGTDYTCT 81

  Fly    48 IDRKAIGRDVINSICAGLNLIEKDYFGLTYETPTDPRTWLDLEKPVSKFFRTDTWPLTFAVKFYP 112
            ::::|.|:.:.:.:|..|||:||||||:||......:.|||..|.:.|...|..|...|.|||||
Zfish    82 VEKRARGQVLFDKVCDHLNLLEKDYFGITYSDTESQKNWLDASKEIKKQISTSPWSFAFNVKFYP 146

  Fly   113 PEPSQLKEDITRYHLCLQVRNDILEGRLPCTFVTHALLGSYLVQSEMGDYDAEEMPTRAYLKDFK 177
            |:|:||.||||||.||||:|:|::.|||||:|.|||:||||.:|||:||.|: |:...:.|.|.:
Zfish   147 PDPAQLSEDITRYFLCLQLRDDVVSGRLPCSFSTHAVLGSYTLQSELGDCDS-ELQNSSALSDLR 210

  Fly   178 IAPNQTAELEDKVMDLHKTHKGQSPAEAELHYLENAKKLAMYGVDLHPAK--------------D 228
            .||||:.||:|||::||:.::|.:||||::.:|||||||:|||||||.||              |
Zfish   211 FAPNQSKELQDKVLELHRAYRGMTPAEADMLFLENAKKLSMYGVDLHRAKLLTRLEWLAVLQEED 275

  Fly   229 SEGVDIMLGVCASGLLVYRDKLRINRFAWPKILKISYKRHHFYIKIRPGEFEQYESTIGFKLANH 293
            ||||:||||||:|||||||||||||||||||||||||||::||||:||||.||:||||||||.||
Zfish   276 SEGVEIMLGVCSSGLLVYRDKLRINRFAWPKILKISYKRNNFYIKVRPGELEQFESTIGFKLPNH 340

  Fly   294 RAAKKLWKSCVEHHTFFRLMTPEPVSKSKMFPVFGSTYRYKGRTQAES--TNTPVDRTPPKFNRT 356
            :|||:|||.||||||||||::||  :..|.|...||.:||.|||||:|  .::.:.|..|.|.||
Zfish   341 KAAKRLWKVCVEHHTFFRLVSPE--APPKRFLTLGSKFRYSGRTQAQSRRASSQIARAAPHFQRT 403

  Fly   357 LSGARLTSRSMDALALAEKEKVARKSSTLDHRGDRNADGDAHSRSPIKNKKEKDADKEAKLREKK 421
            .|.....:.|||                       |.....:....:||.|......|....|..
Zfish   404 TSRRHTVTASMD-----------------------NTPASVNHEEELKNSKPAAVPDELITAETP 445

  Fly   422 QKEKEEK--ERKEREKRELEEKKKAEKAAKAALAAGAAAGAAVNGNDELNDSNKSDKSSGRRGVG 484
            :|:.|||  ..:|..|...||.::|....|...    ::.|.|:.....:....|.:...||.|.
Zfish   446 EKKSEEKINSTEEENKTTAEEPEQASPVTKCVY----SSDALVSDLSLPSSPVSSTRVRCRRRVC 506

  Fly   485 IFSSGRKSKSGSPSKDGKDKSGKDKDKEVGRLGLVVTSGLGDNQQDQNLDEAARNAAKNRGST-- 547
            :   .:::.|.||:|.|..:. :.:.:|..|..|:....|..:.:.|.|       ::.||:.  
Zfish   507 V---RQRAASVSPAKSGAGER-RRRAQEERRAALLEERALLLSARKQRL-------SRRRGTLFS 560

  Fly   548 ----TPGVTRQYEYAVDNDGNTS 566
                .|.|:.    .:|:||..|
Zfish   561 FSLHLPDVSA----LLDDDGYLS 579

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
coraNP_523791.2 B41 34..224 CDD:214604 99/199 (50%)
FERM_N 36..98 CDD:286467 24/61 (39%)
FERM_M 116..224 CDD:278785 64/107 (60%)
FERM_C_4_1_family 219..312 CDD:270005 80/106 (75%)
FA 323..363 CDD:285894 17/41 (41%)
PQQ_2 829..>972 CDD:290097
4_1_CTD 1612..1698 CDD:283537
epb41l3bNP_999977.1 B41 67..257 CDD:214604 98/190 (52%)
FERM_N 70..132 CDD:286467 24/61 (39%)
FERM_M 152..257 CDD:278785 63/105 (60%)
FERM_C_4_1_family 252..359 CDD:270005 80/106 (75%)
FA 368..408 CDD:285894 17/39 (44%)
Upf2 656..>704 CDD:281974
4_1_CTD 725..830 CDD:283537
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 166 1.000 Domainoid score I3828
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 503 1.000 Inparanoid score I1314
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001068
OrthoInspector 1 1.000 - - otm26068
orthoMCL 1 0.900 - - OOG6_101605
Panther 1 1.100 - - O PTHR23280
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4459
SonicParanoid 1 1.000 - - X1151
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
109.990

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