DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cora and Ptpmeg

DIOPT Version :9

Sequence 1:NP_523791.2 Gene:cora / 37205 FlyBaseID:FBgn0010434 Length:1698 Species:Drosophila melanogaster
Sequence 2:NP_001163309.2 Gene:Ptpmeg / 38059 FlyBaseID:FBgn0261985 Length:974 Species:Drosophila melanogaster


Alignment Length:774 Identity:223/774 - (28%)
Similarity:345/774 - (44%) Gaps:165/774 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 GKPALAR------------VTLLDGSLLDVSIDRKAIGRDVINSICAGLNLIEKDYFGLTY-ETP 80
            |.|.|||            |..||.......|:::|.|.::::.:...|.|.|:|||||.: :.|
  Fly    19 GGPELARDKKTPQRQQCVTVLFLDDITHTFRIEKRAKGSELLDQVFQYLELSERDYFGLLFPQKP 83

  Fly    81 TDPRTWLDLEKPVSK-----FFRTDTWP-LTFAVKFYPPEPSQLKEDITRYHLCLQVRNDILEGR 139
            .|...|:|.:|...|     ....|..| |.|.|||:..:||:|:|:.|||...||::.:||.|:
  Fly    84 GDVVRWVDAQKQFKKQCSSVSLDNDAVPLLEFRVKFFVSDPSRLQEEFTRYQFYLQIKRNILLGK 148

  Fly   140 LPCTFVTHALLGSYLVQSEMGDYDA-EEMPTRAYLKDFKIAPNQTAELEDKVMDLHKTHKGQSPA 203
            |||:..|..||.||.||||:||::| |..|  .||...::..:||.|.|.||.:|||.|:||.||
  Fly   149 LPCSSNTQCLLASYTVQSELGDFNALEHQP--GYLSGMQLLCDQTTEAERKVGELHKLHRGQLPA 211

  Fly   204 EAELHYLENAKKLAMYGVDLHPAKDSEGVDIMLGVCASGLLVYRDKLRINRFAWPKILKISYKRH 268
            :||.:|||:||:|.:||:|||.|.||.|.::.|||.|.||||::..||:|.|:|.|::|:|:||.
  Fly   212 DAEYNYLEHAKRLELYGIDLHRATDSNGKELQLGVSAVGLLVFQHSLRVNTFSWSKMVKVSFKRK 276

  Fly   269 HFYIKIRPGEFEQYESTIGFKLANHRAAKKLWKSCVEHHTFFRLMTPEPVSKSKMFPVFGSTYRY 333
            .|:|::|....|.|::.:||.:::|:.||.|||||||||:||||..|..:|:.....: ||.:.|
  Fly   277 DFFIQLRREPSENYDTLLGFGMSSHKHAKALWKSCVEHHSFFRLKRPHRLSRFLNISL-GSKFYY 340

  Fly   334 KGRTQAESTNTPVD---------RTPPKFNRTLSGARLTSRSMDALALAEKEKVARKSSTLDHRG 389
            .|||:.::......         |:|.|.....:|...||.|.....:.:            |.|
  Fly   341 SGRTELQAVQESKQRGRIHKVFVRSPSKRLLGAAGGVGTSGSSGGTPMQQ------------HSG 393

  Fly   390 DRNADGDAHSRSPIKNKKEKDA------DKEAKLREKK--QKEKEEKERKEREKRE--------- 437
            ..:|  ::|:     |.|...|      .|.::..:.|  .||.:...||..|::.         
  Fly   394 SESA--NSHN-----NGKPAGAGTILTITKTSRPHDNKVTSKEADSMPRKAWEQQSDEYDIQLDV 451

  Fly   438 --LEE-KKKAEKAAKAALAAGAAAGAAVNGNDELNDSNKSDKSSGRRGVGIFSSGRKSKSGSPSK 499
              :|: .::.|.|:.:.:...                              :|||:.|....|:.
  Fly   452 GFIEQCTRRFESASPSPMPPA------------------------------YSSGQHSPILLPTT 486

  Fly   500 ------DGKDKSGKD------KDKEVGRLGLVVTSGLGDNQQDQNLDEAARNAAKNRGSTTPGVT 552
                  ..:.:||.|      :..|.||.|..|..|: |......:.:...:...:|  .||.|.
  Fly   487 IADAVGHQQPESGSDLITIRLQADEQGRYGFNVKGGV-DLSLPVQVSKVVPHTPADR--CTPRVC 548

  Fly   553 RQYEYAVDNDGNTSPTRKSYTPGGFRYDQ------DPNSRKSGADGQEQLSPTSQQKKIGL---- 607
            ...|..:.|..:..         |.|::|      |...:.||    |.|.....|:...|    
  Fly   549 EGDEVLMINGRDVH---------GLRHEQVVAMIRDCRHQASG----ELLLTVRPQRSAPLLLEE 600

  Fly   608 --AFNYAPGNENALKETAEKLKAGQLSPRTQDKLNRGQLSPKSRAKLLQDPLLSPTTRAKLQGSA 670
              .:.|.|.::. :...:..|....|.  ||..|            ||.|.|.|....|:.:...
  Fly   601 EPLYQYVPESDE-IGSHSNLLDGDALF--TQSLL------------LLSDGLASGALLAQYELMY 650

  Fly   671 VDAAAVPLSDSQKRSYSPTKGPQG-YSSGAPGSYKPIS---DPTADFLESQRYNKE-PG 724
            .....:.:::::|    |...|:. |...:|.....:|   ..|.|::.:...|.| ||
  Fly   651 RKNPDLAITEARK----PANAPKNRYRDISPYDCTRVSLVNSLTGDYINANYVNMEIPG 705

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
coraNP_523791.2 B41 34..224 CDD:214604 85/209 (41%)
FERM_N 36..98 CDD:286467 20/67 (30%)
FERM_M 116..224 CDD:278785 55/108 (51%)
FERM_C_4_1_family 219..312 CDD:270005 48/92 (52%)
FA 323..363 CDD:285894 10/48 (21%)
PQQ_2 829..>972 CDD:290097
4_1_CTD 1612..1698 CDD:283537
PtpmegNP_001163309.2 B41 35..232 CDD:214604 83/198 (42%)
FERM_N 38..102 CDD:286467 20/63 (32%)
FERM_M 125..232 CDD:278785 55/108 (51%)
FERM_C_PTPN4_PTPN3_like 226..320 CDD:270010 48/93 (52%)
FA 333..369 CDD:285894 8/36 (22%)
PDZ_signaling 502..589 CDD:238492 21/102 (21%)
Y_phosphatase 666..955 CDD:278528 10/40 (25%)
PTPc 668..955 CDD:238006 10/38 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 106 1.000 Domainoid score I4108
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D29979at33392
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.920

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