DRSC/TRiP Functional Genomics Resources

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Protein Alignment cora and epb41l4a

DIOPT Version :9

Sequence 1:NP_523791.2 Gene:cora / 37205 FlyBaseID:FBgn0010434 Length:1698 Species:Drosophila melanogaster
Sequence 2:NP_571298.2 Gene:epb41l4a / 30470 ZFINID:ZDB-GENE-990415-20 Length:671 Species:Danio rerio


Alignment Length:671 Identity:199/671 - (29%)
Similarity:296/671 - (44%) Gaps:139/671 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 VTLLDGSLLDVSIDRKAI-----GRDVINSICAGLNLIEKDYFGLTYETPTDPRTWLDLEKPVSK 95
            |.|||.|.|.::..::.|     |..|::.:.:.:||.|.:||||.|...:....|||..|.:::
Zfish    15 VLLLDESKLILTTQQQGIKKSTRGCVVMDYVFSHVNLAETEYFGLRYCDRSHQTFWLDPSKTLAE 79

  Fly    96 ----FFRTDTWPLTFAVKFYPPEPSQLKEDITRYHLCLQVRNDILEGRLPCTFVTHALLGSYLVQ 156
                ......:.|.|.||||..:|.:|||:||||...|||:.|:|:|||||.|...|.|.:..:|
Zfish    80 HKDLIATGPPYTLYFGVKFYAEDPGKLKEEITRYQFFLQVKQDVLQGRLPCAFNISAQLAALAIQ 144

  Fly   157 SEMGDYDAEEMPTRAYLKDFKIAPNQTAELEDKVMDLHKTHKGQSPAEAELHYLENAKKLAMYGV 221
            ||:||||..: .|..|:.:::..|:|..:|||.:..:|||..||.|||||.:||..||.|.||||
Zfish   145 SELGDYDPYK-HTAGYVSEYRFVPDQKEDLEDSIEQIHKTLLGQVPAEAENNYLAIAKTLEMYGV 208

  Fly   222 DLHPAKDSEGVDIMLGVCASGLLVYRDKLRINRFAWPKILKISYKRHHFYIKIRPGEFEQYESTI 286
            ||||....:..:..||:...|::||::|.::.::.||:|.|:.:|...|.:::...:..  |::.
Zfish   209 DLHPVFGEKQAEYFLGLTPVGVVVYKNKTQVGKYFWPRITKVYFKETQFELRVLGRDCN--ETSF 271

  Fly   287 GFKLANHRAAKKLWKSCVEHHTFFRLMTPEPVSKS-----KMFPVFGSTYRYKGRTQ----AEST 342
            .|..|:..|.|.|||.|||||||||:  ||..|.|     ..|...||.:||.|:|.    .|||
Zfish   272 FFDAASKTACKNLWKCCVEHHTFFR
M--PENESNSLTRKLSKFSSLGSKHRYSGKTAMQIGREST 334

  Fly   343 NT----------------PVDRTPP-----------KFNRTLSGARLTS----------RSMDAL 370
            .|                |...|.|           |...|..|...||          ::..|.
Zfish   335 ETLPRADLQVIRTRSKTYPKRSTQPAGRNNGGQAVTKMENTSEGQPKTSALTPVKSPRVKAESAS 399

  Fly   371 ALAEK-----EKVARKSSTLDHRGDRNAD---GDAHSRSPIKNKKEKDADKEAKLREKKQKEKEE 427
            ...:|     |:.|.:|...:...:||..   ..||.|||....:.:...:..:..:..|..|:.
Zfish   400 VQQDKPSAPWEEDAPQSGLYNSASERNKSPKFPKAHRRSPSGGSENEPRHRRGQTPDDAQASKQH 464

  Fly   428 KER----------KEREKRELEEKKKAEKAAKAALAAGAAAGAAVNGNDELNDS----------- 471
            :.|          .|.|....|.:||..::.:               .:|:.||           
Zfish   465 RRRSRSRGNTSSGSESENSNREHRKKRNRSRQ---------------ENEMVDSAPQWEVVLRRQ 514

  Fly   472 -NKSDKSSGRRGVGIFSSGRKSKSGSPSKDGKDKSGKDKDKEVGRLGLVVTSGLGDNQQDQ---N 532
             .|:.....:|     .|..:|:|.||....|::..|...||     ||..|||.:.|..:   .
Zfish   515 KEKTPNDPNQR-----RSRHRSRSRSPDVQAKEQLWKHIQKE-----LVDPSGLSEEQLKEIPYK 569

  Fly   533 LDEAARNAAKNRGSTTPGVTRQYEYAVDNDGNTS----------------PTRKSYTPGGFRYDQ 581
            ..|...:..|.|.|.:|...|||..:..:||..|                .||.:..||.   ..
Zfish   570 KVETQGDPIKIRHSHSPRSFRQYRRSHCSDGERSVLSEVNSRTDLVPPLAVTRTADVPGS---SS 631

  Fly   582 DPNSRKSGADGQEQLSPTSQQ 602
            .|..:|.|:  ::.||.:|:|
Zfish   632 TPAQKKKGS--KDTLSESSEQ 650

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
coraNP_523791.2 B41 34..224 CDD:214604 82/196 (42%)
FERM_N 36..98 CDD:286467 21/70 (30%)
FERM_M 116..224 CDD:278785 54/107 (50%)
FERM_C_4_1_family 219..312 CDD:270005 35/92 (38%)
FA 323..363 CDD:285894 17/70 (24%)
PQQ_2 829..>972 CDD:290097
4_1_CTD 1612..1698 CDD:283537
epb41l4aNP_571298.2 B41 13..211 CDD:214604 82/196 (42%)
FERM_N 15..82 CDD:286467 21/66 (32%)
FERM_M 105..211 CDD:278785 54/106 (51%)
FERM_C_NBL4_NBL5 207..296 CDD:270007 33/90 (37%)
FA 311..354 CDD:285894 11/42 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 323..541 44/237 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3530
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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