DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cora and epb41l1

DIOPT Version :9

Sequence 1:NP_523791.2 Gene:cora / 37205 FlyBaseID:FBgn0010434 Length:1698 Species:Drosophila melanogaster
Sequence 2:XP_012808193.1 Gene:epb41l1 / 100127644 XenbaseID:XB-GENE-877327 Length:1292 Species:Xenopus tropicalis


Alignment Length:1800 Identity:459/1800 - (25%)
Similarity:664/1800 - (36%) Gaps:676/1800 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 PAEIKPSAPAEPETPTKSKPKSSSSSHG---KPALARVTLLDGSLLDVSIDRKAIGRDVINSICA 63
            |.|.:..|....|..|.:..:.|...|.   |.||.||||||.|..:..|::.|.|:.:.:::|.
 Frog    53 PGEGEERADLASERTTPTHMQRSPQKHSRKPKSALCRVTLLDSSNYECEIEKHARGQVLFDTVCG 117

  Fly    64 GLNLIEKDYFGLTYETPTDPRTWLDLEKPVSKFFRTD--TWPLTFAVKFYPPEPSQLKEDITRYH 126
            .|||:||||||||:......:.|||..|.:.|..:::  .|...|.||||||:||||.||||||:
 Frog   118 HLNLLEKDYFGLTFCDTDSQKNWLDPSKEIKKQIKSECGAWTFGFTVKFYPPDPSQLTEDITRYY 182

  Fly   127 LCLQVRNDILEGRLPCTFVTHALLGSYLVQSEMGDYDAEEMPTRAYLKDFKIAPNQTAELEDKVM 191
            ||||:|.||:.|||||:||||||||||.||:|:||||.||.... |:.:.:.:||||.|||:::|
 Frog   183 LCLQLRADIISGRLPCSFVTHALLGSYTVQAELGDYDPEENHGN-YVSELRFSPNQTRELEERIM 246

  Fly   192 DLHKTHKGQSPAEAELHYLENAKKLAMYGVDLHPAKDSEGVDIMLGVCASGLLVYRDKLRINRFA 256
            :||||::|.:|||||:|:|||||||:|||||||.||||||:||||||||:|||:|||:|||||||
 Frog   247 ELHKTYRGMTPAEAEIHFLENAKKLSMYGVDLHHAKDSEGIDIMLGVCANGLLIYRDRLRINRFA 311

  Fly   257 WPKILKISYKRHHFYIKIRPGEFEQYESTIGFKLANHRAAKKLWKSCVEHHTFFRLMTPEPVSKS 321
            |||||||||||.:|||||||||:||:||||||||.||||||:|||.|:||||||||::|||..|.
 Frog   312 WPKILKISYKRSNFYIKIRPGEYEQFESTIGFKLPNHRAAKRLWKVCIEHHTFFRLVSPEPAPKG 376

  Fly   322 KMFPVFGSTYRYKGRTQAES--TNTPVDRTPPKFNRTLSGARLTSRSMDA-----LALAEKEKVA 379
              |.|.||.:||.|||||::  .:..:||..|.|.|:.|.....|:|.:.     .|:.|..:.:
 Frog   377 --FLVMGSKFRYSGRTQAQTQQASALIDRPAPNFKRSSSKRYTLSQSQEGGFSRPTAVNENHESS 439

  Fly   380 RKSSTLDHRGDR--NADGDAHSRSPIKNKKEKDADKEAKLREKKQKEKEE--------------- 427
            .:.:..|| |:.  ..:|.....:|.|.|:.| :::|:..|.|:..:|.|               
 Frog   440 PEKNHEDH-GEELDREEGQEEVTTPTKIKELK-SEQESTPRHKEFLDKSEDVLLKHQASINELKR 502

  Fly   428 -----------KERKEREKR-------ELEEKKKAEKAAKAALAAGAAAGAAVNGNDELNDSNKS 474
                       :|| .||||       ...:.:..|.|.|.  ....|.|||:..::.....:.:
 Frog   503 TLKQPNSKLVHRER-GREKRLPSSPTSSSPKPEDGEDAVKH--VEDEADGAAIQDSEVFTQKSLA 564

  Fly   475 DKSSGRRGVGIFSSGRKSKSGSPSKDGKDKSGKDKDKEVGRL-GLVVTS-----GLGDNQQDQNL 533
            ....|.....:.....|:...||        |:.:.||:.:| ||.:::     .|.:.|..:..
 Frog   565 SSPEGMENWVLVERSTKNTQVSP--------GEMEKKEIEQLPGLDLSAIDEEPPLNEMQVSRVR 621

  Fly   534 DEAARNAAK-NRGSTTP---------------------GVTRQYEYAVDNDGNTSP--------- 567
            :|:.:...: .|||..|                     .|..::| .|||...|:|         
 Frog   622 EESRKEEVRMERGSEKPIQASRVVERRIRLTEREERLVMVASEWE-DVDNKARTAPDGAPAEDSR 685

  Fly   568 ------TRKSYTPGGFRYDQDPNSRKSGADGQEQLSPTSQQKKIGLAFNYAPGNENALKETAEKL 626
                  .:...|....:.::....|||...|:|    ||.:|:        .||...:..|:||.
 Frog   686 GWTFKGEKTELTAAWSQGEEAQQKRKSNTAGKE----TSFEKR--------DGNGITVLGTSEKH 738

  Fly   627 KAGQLSPRTQDKLNRGQLSPKSRAKLLQDPLLSPTTRAKLQGSAVDA-----AAVPLSDSQKRSY 686
            |          .:.:|.|.|....:|:       ....:....|.||     ..:|..:.:    
 Frog   739 K----------DVCKGILDPGESRRLI-------VCEEEAGDCAEDAENDWPVGLPWEEQE---- 782

  Fly   687 SPTK--GPQGYSSGAPGSYKPISDPTADFLESQRYNKEPGYVGPSKADVAAGLAGAAGSKKPGSP 749
            ||..  ...||........:.|:|..|.|.:..:..:                     .:|.|:.
 Frog   783 SPLVWCESSGYQQLVKQEDQDITDSFASFNQQGQQTQ---------------------FRKSGNK 826

  Fly   750 TKTGKGAPGAAAAAAAGAAGAAAAAAKPKKRRVKIMVITSKFDPSTKRIDAENGSIEHSTGILDP 814
            .|.....||..         .:|::.:||.              :.||:.|....::|..   :.
 Frog   827 LKKNGSPPGQT---------GSASSERPKF--------------TVKRVSAGFLRLDHPP---EE 865

  Fly   815 ATGLIDTKYGVIDPKKGTLEALNTKTGKKEVFQGDVDGKTGNLHLVSGVADPKTGRLDDTLGQIV 879
            ..|..||     |..:|...|..:..|  .:..|.|           |.:..:.||...      
 Frog   866 KGGPRDT-----DMNRGEETAACSAVG--NISPGPV-----------GCSATERGRAKS------ 906

  Fly   880 CITPQDNPVVELTVITSRIDPATGKIDTVNGDVERSLGVLNLDTGLLDTKYGEINTRTGELKAID 944
              |.:|.....|..:...:.|....:|                           |.|..:.:|.|
 Frog   907 --TGEDWGQQALHFMLPTVVPLPVTLD---------------------------NNREHQARAAD 942

  Fly   945 PKSGKIVVSKNVKVDPGTGQITILGIVDPKTNKIDPNQGRLIEVGQQIDPIVEVTSLAGKFDSKR 1009
            |..                                             .|::|..|        |
 Frog   943 PTE---------------------------------------------QPLLESNS--------R 954

  Fly  1010 NIID--PKTAQVETSGGQFDPKAGKIDTKYGQIDLVKHTITFNDPKSGKTVTRDIKIEPTTGQIV 1072
            |..|  |..:..:|.|                 ||       :.|.||..:|             
 Frog   955 NAGDASPAESTTDTPG-----------------DL-------SSPDSGCEIT------------- 982

  Fly  1073 LKNQVNPKNNKPDKDYARIISLRIVQQRVDPATKAPITEVSASKDKDIVVDPKSNQIWVPTGATD 1137
                                       ..|||.: |: |.::.:::|           ||:...:
 Frog   983 ---------------------------LTDPACQ-PL-EATSWEERD-----------VPSALRE 1007

  Fly  1138 PATKEQQYISSSVDPKTGYVITIYGYLDPKTNEIKKQTKLDPNTIKIEPTSGKIYTATGEVDQAT 1202
            ....:|.:      .|||.|  :|..:..:..|              ||      ..|||.:|..
 Frog  1008 VTLPDQGF------RKTGSV--LYQRVSSRETE--------------EP------RGTGEEEQNA 1044

  Fly  1203 GEPLYAATQVDPESGEVYTKLARVDPKTGKIVIVRILLISKTDERGRPEEIDPSTCEIDPVSGRV 1267
            |  |....|:.            ::.|...|                                  
 Frog  1045 G--LLKENQLS------------IERKCSSI---------------------------------- 1061

  Fly  1268 LKFFNKTVYVYNMIDPVTGEIVQVDPNDPRFAGARTTVTHTMTLTGEIDPVTGRIKSEYGDIDPN 1332
                                                ||:.|.:|..|:|      .:..||...|
 Frog  1062 ------------------------------------TVSSTSSLEAEVD------FTVIGDYHSN 1084

  Fly  1333 TGDIDPATAVTDPVTGKLILNYAQIDPSHFGKQAQVQTTTETVPITRQQFFDGVKHISKGALRRD 1397
            .|..|.:.::.:                                                 |.||
 Frog  1085 VGFEDFSRSLPE-------------------------------------------------LHRD 1100

  Fly  1398 SEGSSDDDMTAQYGADQVNEILIGSPAGQAGGKLGKPVSTPTVVKTTTKQVLTKNIDGVTHNVEE 1462
            .                             |...|.|:...:...:...|             :|
 Frog  1101 Q-----------------------------GDGAGGPIENNSTAASNEMQ-------------DE 1123

  Fly  1463 EVRNLGTGEVTYSTQEHKADATPTDLSG---AYVTATAVTTRTATTHEDLGKNAKTEQLEEKTVA 1524
            |.::|.|.|......:.:..:|.|.:||   .:.|.|.|||..||                    
 Frog  1124 ETKDLETVEPCLQNVQKEVVSTVTTVSGTTDGHSTETQVTTVKAT-------------------- 1168

  Fly  1525 TTRTHDPNKQQQRVVTQEVKTTATVTS-GDQYQRRDSVSSTSSGDSGTPIDGPYDGASVVRTDNQ 1588
                        :||  ||||.|.|.. ||             |..|:..||       .||.  
 Frog  1169 ------------QVV--EVKTEARVAECGD-------------GAQGSHTDG-------ARTH-- 1197

  Fly  1589 KSPLFTTSATTGPHVESTRVVLGEDTPGFSGHGEIISTQTVSSKTRTVETITYKTERDGIVETRV 1653
                         |...|.::           ....:.:|:||.|.|..|   ||.:.|..|||:
 Frog  1198 -------------HALPTAII-----------PHAATAETLSSSTTTHVT---KTVKGGFSETRI 1235

  Fly  1654 EQKITIQSDGDPIDHDKALAEAIQEATAMNPDMTVEKIEIQQQTQ 1698
            |::|.|..|.| :|.::|||.||:||...:|||.|.|..:..:|:
 Frog  1236 EKRIIITGDED-VDQEQALALAIKEAKLQHPDMMVTKAVVYCETE 1279

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
coraNP_523791.2 B41 34..224 CDD:214604 108/191 (57%)
FERM_N 36..98 CDD:286467 26/61 (43%)
FERM_M 116..224 CDD:278785 72/107 (67%)
FERM_C_4_1_family 219..312 CDD:270005 79/92 (86%)
FA 323..363 CDD:285894 17/41 (41%)
PQQ_2 829..>972 CDD:290097 18/142 (13%)
4_1_CTD 1612..1698 CDD:283537 30/85 (35%)
epb41l1XP_012808193.1 B41 88..279 CDD:214604 108/191 (57%)
FERM_N 90..153 CDD:286467 26/62 (42%)
FERM_M 172..279 CDD:278785 72/107 (67%)
FERM_C_4_1_family 274..367 CDD:270005 79/92 (86%)
FA 376..416 CDD:285894 17/41 (41%)
SAB 481..522 CDD:282265 7/41 (17%)
4_1_CTD <1224..1279 CDD:283537 24/55 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 169 1.000 Domainoid score I3756
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 551 1.000 Inparanoid score I1111
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001068
OrthoInspector 1 1.000 - - otm48868
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4459
SonicParanoid 1 1.000 - - X1151
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.080

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