DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment 5-HT1A and htr1d

DIOPT Version :9

Sequence 1:NP_001356890.1 Gene:5-HT1A / 37196 FlyBaseID:FBgn0004168 Length:846 Species:Drosophila melanogaster
Sequence 2:NP_001139158.1 Gene:htr1d / 556429 ZFINID:ZDB-GENE-090409-3 Length:386 Species:Danio rerio


Alignment Length:631 Identity:173/631 - (27%)
Similarity:233/631 - (36%) Gaps:255/631 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   192 LANRSGQLDLINGTGGLNVTTSKVAEDDFTQLLRMAVTSVLLGLMILVTIIGNVFVIAAIILERN 256
            |.|.|.:..|||.|  ::.||.: :.||.|.|......|.:|.::.|.|.:.|.||||.|.|.|.
Zfish     3 LFNSSDEFFLINAT--VSPTTLE-SWDDATLLSLQISISAMLAIVTLATALSNAFVIATIFLTRK 64

  Fly   257 LQNVANYLVASLAVADLFVACLVMPLGAVYEISQGWILGPELCDIWTSCDVLCCTASILHLVAIA 321
            |...||:|:.|||..||.|:.||||:..||.:|:.|.||..:||||.|.|:..||||||||..||
Zfish    65 LHTPANFLIGSLAATDLLVSILVMPISIVYTVSKTWTLGQIVCDIWLSSDITFCTASILHLCVIA 129

  Fly   322 VDRYWAVTN-IDYIHSRTSNRVFMMIFCVWTAAVIVSLAPQFGWKDPDYLQRIEQQKCMVSQD-V 384
            :|||||:|: ::|...||..|..:||..||..:|.:||.|.| |:.....:  |..:|||:.| :
Zfish   130 LDRYWAITDALEYSKRRTMRRAALMIVIVWVISVSISLPPLF-WRQAKAHE--ELTECMVNTDQI 191

  Fly   385 SYQVFATCCTFYVPLLVILALYWKIYQTARKRIHRRRPRPVDAAVNNNQPDGGAATDTKLHRLRL 449
            ||.:::|...||||.::::.||.:||..||.||                                
Zfish   192 SYTLYSTFGAFYVPTVLLMILYGRIYVAARSRI-------------------------------- 224

  Fly   450 RLGRFSTAKSKTGSAVGVSGPASGGRALGLVDGNSTNTVNTVEDTEFSSSNVDSKSRAGVEAPST 514
                |.|                                                       |:|
Zfish   225 ----FKT-------------------------------------------------------PAT 230

  Fly   515 SGNQIATVSHLVALAKQQGKSTAKSSAAVNGMAPSGRQEDDGQRPEHGEQEDREELEDQDEQVGP 579
            ||.:. |.:.|:                                                     
Zfish   231 SGKRF-TAAQLI----------------------------------------------------- 241

  Fly   580 QPTTATSAMTAAGTNESEDQCKANGVEVLEDPQLQQQLEQVQQLQKSVKSGGGGGASTSNATTIT 644
            |.:..:|..:...|:..|....|.|                     ...||||||....      
Zfish   242 QNSAGSSLCSLNSTSNQEGHLNAGG---------------------GGGSGGGGGGGGG------ 279

  Fly   645 SISALSPQTPTSQGVGIAAAAAGPMTAKTSTLTSCNQSHPLCGTANESPSTPEPRSRQPTTPQQQ 709
                 ||....|..|.:|                                               
Zfish   280 -----SPLFTNSVKVKLA----------------------------------------------- 292

  Fly   710 PHQQAHQQQQQQQQLSSIANPMQKVNKRKETLEAKRERKAAKTLAIITGAFVVCWLPFFVMALTM 774
                                  ..|.:||. |.|.||:||.|||.||.|||:||||||||..|.|
Zfish   293 ----------------------DSVLERKR-LCAAREKKATKTLGIILGAFIVCWLPFFVFTLVM 334

  Fly   775 PLCAACQISDSVASLFLWLGYFNSTLNPVIYTIFSPEFRQAFKRIL 820
            .:|..|.....:..:|.||||.||.:||||||.|:.:|:|||.:::
Zfish   335 GVCKDCWYHPVLFDVFTWLGYLNSLINPVIYTAFNDDFKQAFHKLI 380

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
5-HT1ANP_001356890.1 7tmA_5-HT1A_invertebrates 227..>413 CDD:320454 84/187 (45%)
TM helix 1 228..254 CDD:320454 10/25 (40%)
TM helix 2 261..287 CDD:320454 14/25 (56%)
TM helix 3 299..329 CDD:320454 21/29 (72%)
TM helix 4 340..362 CDD:320454 9/21 (43%)
TM helix 5 383..412 CDD:320454 12/29 (41%)
7tm_GPCRs <743..816 CDD:355774 41/72 (57%)
TM helix 6 747..772 CDD:341315 18/24 (75%)
TM helix 7 784..809 CDD:341315 13/24 (54%)
htr1dNP_001139158.1 7tm_1 52..365 CDD:278431 148/562 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D310620at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X366
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.920

Return to query results.
Submit another query.