DRSC/TRiP Functional Genomics Resources

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Protein Alignment 5-HT1A and Octalpha2R

DIOPT Version :10

Sequence 1:NP_001356890.1 Gene:5-HT1A / 37196 FlyBaseID:FBgn0004168 Length:846 Species:Drosophila melanogaster
Sequence 2:XP_061501849.1 Gene:Octalpha2R / 3289716 VectorBaseID:AGAMI1_006243 Length:636 Species:Anopheles gambiae


Alignment Length:792 Identity:206/792 - (26%)
Similarity:325/792 - (41%) Gaps:210/792 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 DFIGSLALKPPPTD---------VNTTTTTAGSP-LATAALAAAAASASVAAAAARITAKAAHRA 136
            ||:.|     ||.:         |....|..|.| :...:||.|||:|:.|||||          
Mosquito     2 DFVSS-----PPGNITQEDFLAIVGANGTVGGGPTMFNDSLAVAAAAAAAAAAAA---------- 51

  Fly   137 LTTKQDATSSPASSPALQLIDMDNNYTNVAVGLGAMLLNDTLLLEGNDSSLFGEMLANRSGQLDL 201
                 ...:.|..:               |.|:|.                              
Mosquito    52 -----GGVAGPGGT---------------AAGVGP------------------------------ 66

  Fly   202 INGTGGLNVTTSKVAEDDFTQLLRMAVTSVLLGLMILVTIIGNVFVIAAIILERNLQNVANYLVA 266
                 |.|:|....|......|..:.:.|:::.::::|.::||:.||.||..|:.|:|:.|:.:|
Mosquito    67 -----GENLTILHGAYPSGYTLPHIIIASIIVTILMIVIVVGNMLVIIAIATEKTLKNIQNWFIA 126

  Fly   267 SLAVADLFVACLVMPLGAVYEISQGWILGPELCDIWTSCDVLCCTASILHLVAIAVDRYWAVTN- 330
            ||||||.|:..::||.....|:...||.|...||:.::.|||.||:||::|..|::||||::|. 
Mosquito   127 SLAVADFFLGLVIMPFSLANELMGYWIFGNWWCDVHSAMDVLLCTSSIMNLCLISLDRYWSITKA 191

  Fly   331 IDYIHSRTSNRVFMMIFCVWTAAVIVSLAPQFGWKDPDYLQRIEQQKCMVSQDVSYQVFATCCTF 395
            |:|:.|||..|...||..||..:.:|.:.|..|||.......:|..:|.:|||:.|.:::...:|
Mosquito   192 IEYLKSRTPARAAFMIAAVWIMSALVCIPPLLGWKAQRPEGHVELPQCQLSQDIGYVLYSALGSF 256

  Fly   396 YVPLLVILALYWKIYQTARKRIHRR-RPRPV-----------------------DAAVNNNQPDG 436
            |:|..:::.:|.:||..|:.|..|. |.:|:                       .|:.|||| ..
Mosquito   257 YIPSCIMVFVYIRIYFAAKARARRGIRKKPLKPPSEQDTSFTRNAGTVPMPSLPSASSNNNQ-SA 320

  Fly   437 GAATDTKLHRLRLRLGRFSTAKSKTGSAVGVSGPASGGRALGLVDGNSTNTVNTVEDTEFSSSNV 501
            .||...:.|.::|..|    |:....:.:....|...|..:.:          .|...:|:|...
Mosquito   321 AAAAHHQQHPVQLSSG----AQGGGSTQIATIEPPPRGTPMPI----------PVVTCDFASDMS 371

  Fly   502 DSKSRAGVEAPSTSGNQIATVSHL---------VALAKQQGKSTAKSSAAVNGMAPSGRQEDDGQ 557
            .|      ||.:...:|...:|.:         |....|||:||       ||:..:|...:...
Mosquito   372 TS------EAATAEQDQHGPISPVALEPKDTLKVTQPAQQGRST-------NGITAAGAATEPVA 423

  Fly   558 RPEHGEQEDREELEDQDEQVGPQ--PTTATSAMTAAGTNESEDQCKANGVEVLE----DPQLQQQ 616
            .|.......|......|..:..:  |:::.|.:.:        :|..  |:.|:    .|...:.
Mosquito   424 SPSSAAARSRALSVGIDTDMVSEFDPSSSDSGVIS--------RCAV--VKPLKFRLCQPIFGKG 478

  Fly   617 LEQVQQLQKSVKSGGGGGASTSNATTITS--ISALSPQTPTSQGVGIAAAAAGPMTAKTSTLTSC 679
            ..:.:|........||..|...||...|.  ::|...|...||           :.|...|.::|
Mosquito   479 KAKARQANAKAAGHGGAHAGRGNAPNCTQPMLAAPGGQQAISQ-----------LIAAKQTDSAC 532

  Fly   680 NQSHPLCGTANESPSTPEPRSRQPTTPQQQPHQQAHQQQQQQQQLSSIANPMQKVNKRKETLEAK 744
            ::..|..        .|:|:.|.|                               .|.|..:..|
Mosquito   533 SELEPAL--------PPKPKPRDP-------------------------------EKEKRRIARK 558

  Fly   745 RERKAAKTLAIITGAFVVCWLPFFVMALTMPLCAACQISDSVASLFLWLGYFNSTLNPVIYTIFS 809
            :|::|...|.:|.|:|:.||||||.:.:.:|:|..|.|.||..||..||||.||.|||.|||||:
Mosquito   559 KEKRATLILGLIMGSFIACWLPFFFLYILVPVCPDCHIPDSAFSLAFWLGYMNSALNPAIYTIFN 623

  Fly   810 PEFRQAFKRILF 821
            .:||:||:||||
Mosquito   624 KDFRRAFRRILF 635

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
5-HT1ANP_001356890.1 7tmA_5-HT1A_invertebrates 227..>413 CDD:320454 69/186 (37%)
TM helix 1 228..254 CDD:320454 8/25 (32%)
TM helix 2 261..287 CDD:320454 11/25 (44%)
TM helix 3 299..329 CDD:320454 15/29 (52%)
TM helix 4 340..362 CDD:320454 7/21 (33%)
TM helix 5 383..412 CDD:320454 8/28 (29%)
7tm_GPCRs <743..816 CDD:475119 37/72 (51%)
TM helix 6 750..772 CDD:410628 10/21 (48%)
TM helix 7 784..809 CDD:410628 17/24 (71%)
Octalpha2RXP_061501849.1 None

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