DRSC/TRiP Functional Genomics Resources

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Protein Alignment 5-HT1A and LOC1274064

DIOPT Version :10

Sequence 1:NP_001356890.1 Gene:5-HT1A / 37196 FlyBaseID:FBgn0004168 Length:846 Species:Drosophila melanogaster
Sequence 2:XP_061497507.1 Gene:LOC1274064 / 1274064 VectorBaseID:AGAMI1_002176 Length:772 Species:Anopheles gambiae


Alignment Length:354 Identity:70/354 - (19%)
Similarity:115/354 - (32%) Gaps:98/354 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   481 DGNSTNTVNTVEDTEFSSSNVDSKSR------AGVEAPSTSGNQ--IATVSHLVALAKQQGKSTA 537
            |..:.:..|||:|...    .|..::      |||.|.......  :..|..:..:.|.:.|.|.
Mosquito     9 DCGACDKANTVDDMVL----CDGCAKWYHYGCAGVTANVAKRKWFCVQCVKKVPVIGKSEAKPTL 69

  Fly   538 KS--SAAVNGMAPSGRQ-EDDGQRPEHGEQEDREELEDQDEQVGPQPTTATSAMTAAGTNESEDQ 599
            :.  ||..|..|.|.:. |..|.....|...:|..:  ||:...||...:.:..|..|.:.|...
Mosquito    70 REEVSAKDNKPAESCQNVEKQGAADSEGGSSERTVV--QDKPSPPQTAKSKAPSTRRGGSASSQL 132

  Fly   600 CKANGVE------------------------VLEDPQLQQQLEQVQQLQKSVKSGGGGGASTSNA 640
            ...|.:|                        .||..:|:.|||:...::.|..|...|.:..:..
Mosquito   133 SVRNALERLAKKQELEKKMAEKEFQLKMAKMELEQEELRMQLEEQLDIEGSECSIISGKSVRAKI 197

  Fly   641 TTITSISALS--------PQTPTS------------QGVGIAAAAAGP--MTAKT---------- 673
            .......||:        |||..|            :...:......|  :||:.          
Mosquito   198 WVRDQNQALAKPAQVQTHPQTEASPVTKRRIAENNLENAMVERNGLTPSQITARNHYPKQLPKFS 262

  Fly   674 ------STLTSC-NQSHPLCGTANESPSTPEPRSRQPTTPQQQPHQQAHQQQQQQQQLSSIANPM 731
                  :...|| |:|:..||.:|.     |...|.    ::..|..|.:..|.:....:....:
Mosquito   263 GSPKEWAVFISCYNESNEACGFSNR-----ENLLRL----EECLHGAAREAVQSKLTTPNAVPDI 318

  Fly   732 QKVNKR---------KETLEAKRERKAAK 751
            .||.||         :|.::..|:.:|.|
Mosquito   319 IKVLKRLYGRPALIVQELIDKARQTEAPK 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
5-HT1ANP_001356890.1 7tmA_5-HT1A_invertebrates 227..>413 CDD:320454
TM helix 1 228..254 CDD:320454
TM helix 2 261..287 CDD:320454
TM helix 3 299..329 CDD:320454
TM helix 4 340..362 CDD:320454
TM helix 5 383..412 CDD:320454
7tm_GPCRs <743..816 CDD:475119 3/9 (33%)
TM helix 6 750..772 CDD:410628 1/2 (50%)
TM helix 7 784..809 CDD:410628
LOC1274064XP_061497507.1 None
Blue background indicates that the domain is not in the aligned region.

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