DRSC/TRiP Functional Genomics Resources

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Protein Alignment 5-HT1A and htr5a

DIOPT Version :9

Sequence 1:NP_001356890.1 Gene:5-HT1A / 37196 FlyBaseID:FBgn0004168 Length:846 Species:Drosophila melanogaster
Sequence 2:XP_002932543.2 Gene:htr5a / 100487444 XenbaseID:XB-GENE-981825 Length:351 Species:Xenopus tropicalis


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
5-HT1ANP_001356890.1 7tmA_5-HT1A_invertebrates 227..>413 CDD:320454
TM helix 1 228..254 CDD:320454
TM helix 2 261..287 CDD:320454
TM helix 3 299..329 CDD:320454
TM helix 4 340..362 CDD:320454
TM helix 5 383..412 CDD:320454
7tm_GPCRs <743..816 CDD:355774
TM helix 6 747..772 CDD:341315
TM helix 7 784..809 CDD:341315
htr5aXP_002932543.2 7tmA_5-HT5 36..343 CDD:320451
TM helix 1 37..63 CDD:320451
TM helix 2 70..96 CDD:320451
TM helix 3 109..139 CDD:320451
TM helix 4 151..172 CDD:320451
TM helix 5 191..220 CDD:320451
TM helix 6 272..302 CDD:320451
TM helix 7 311..336 CDD:320451
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24247
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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