DRSC/TRiP Functional Genomics Resources

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Protein Alignment 5-HT1B and LPAR2

DIOPT Version :9

Sequence 1:NP_001137708.2 Gene:5-HT1B / 37191 FlyBaseID:FBgn0263116 Length:629 Species:Drosophila melanogaster
Sequence 2:XP_016882957.1 Gene:LPAR2 / 9170 HGNCID:3168 Length:351 Species:Homo sapiens


Alignment Length:578 Identity:111/578 - (19%)
Similarity:168/578 - (29%) Gaps:297/578 - (51%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 LSQIVWNRSINGNGNSNTFDLVDDEQERAAVEFWLLVKMIAMAVVLGLMILVTIIGNVFVIAAII 116
            :.|..:|.:|....|::..:|....:.:..|       ::|:.:.:.:::|:|   |:.|||||.
Human     4 MGQCYYNETIGFFYNNSGKELSSHWRPKDVV-------VVALGLTVSVLVLLT---NLLVIAAIA 58

  Fly   117 LERNLQNVANYLVASLAVADLF--VACLVM-----PLGAVYEISNGWILGPELCDIWTSCDVLCC 174
            ..|.......||:.:||.||||  ||.|.:     |..|...: .||.|...|.|  ||     .
Human    59 SNRRFHQPIYYLLGNLAAADLFAGVAYLFLMFHTGPRTARLSL-EGWFLRQGLLD--TS-----L 115

  Fly   175 TASILHLVAIAADRYWTVTNIDYNNLRTPR-RVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIE 238
            |||:..|:|||.:|:.:|..:..:: |.|| ||.::|..||.|||.:.|.|...|          
Human   116 TASVATLLAIAVERHRSVMAVQLHS-RLPRGRVVMLIVGVWVAALGLGLLPAHSW---------- 169

  Fly   239 EQHCMVSQDVGYQIFATCCTFYVPLL------------VILFL-----YWKIYIIARKRIQRRAQ 286
              ||:.:.|        .|:...|||            :::||     |.:|:...|:|:||.|:
Human   170 --HCLCALD--------RCSRMAPLLSRSYLAVWALSSLLVFLLMVAVYTRIFFYVRRRVQRMAE 224

  Fly   287 KSFNVTLTETDCDSAVRELKKERSKRRAERKRLEAGERTPVDGDGTGGQLQRRTRKRMRICFGRN 351
                    ...|....||                                               
Human   225 --------HVSCHPRYRE----------------------------------------------- 234

  Fly   352 TNTANVVAGSEGAVARSMAAIAVDFASLAITREETEFSTSNYDNKSHAGTELTTVSSDADDYRTS 416
                                                                ||:|         
Human   235 ----------------------------------------------------TTLS--------- 238

  Fly   417 NANEIITLSQQVAHATQHHLIASHLNAITPLAQSIAMGGVGCLTTTTPSEKALSGAGTVAGAVAG 481
                                                                             
Human   239 ----------------------------------------------------------------- 238

  Fly   482 GSGSGSGEEGAGTEGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVIC 546
                                                              ..:|:.||.||||:|
Human   239 --------------------------------------------------LVKTVVIILGAFVVC 253

  Fly   547 WLPFFVMALTMSL-CKECEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFKRIL 603
            |.|..|:.|...| |:.|.: .||...||.|...||.:|..:|:..:.|.||.|:|:|
Human   254 WTPGQVVLLLDGLGCESCNV-LAVEKYFLLLAEANSLVNAAVYSCRDAEMRRTFRRLL 310

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
5-HT1BNP_001137708.2 7tm_1 107..>288 CDD:278431 66/205 (32%)
LPAR2XP_016882957.1 7tm_GPCRs 33..306 CDD:391938 103/543 (19%)
TM helix 1 35..59 CDD:341315 9/26 (35%)
TM helix 2 68..89 CDD:341315 11/20 (55%)
TM helix 3 105..127 CDD:341315 11/28 (39%)
TM helix 4 149..165 CDD:341315 7/15 (47%)
TM helix 5 186..209 CDD:341315 2/22 (9%)
TM helix 6 237..262 CDD:341315 12/148 (8%)
TM helix 7 274..299 CDD:341315 9/24 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S7328
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.860

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