DRSC/TRiP Functional Genomics Resources

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Protein Alignment 5-HT1B and htr2cl2

DIOPT Version :10

Sequence 1:NP_001137708.2 Gene:5-HT1B / 37191 FlyBaseID:FBgn0263116 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_001429473.1 Gene:htr2cl2 / 798599 ZFINID:ZDB-GENE-120215-109 Length:348 Species:Danio rerio


Alignment Length:516 Identity:111/516 - (21%)
Similarity:189/516 - (36%) Gaps:202/516 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYEISN-GWI 157
            |:.:.::|..||.||:.||.|:.:|..|.|..|:.:.||||||:.|..||||:..:..:.| .|.
Zfish    24 ALFILVIIFFTIAGNILVIMAVSIESKLHNPTNFFLCSLAVADMLVGFLVMPISLISILYNHTWP 88

  Fly   158 LGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTN-IDYNNLRTPRRVFLMIFCVWFAALIVS 221
            |...||.:|...|||..||||:||.||:.|||..:.| ...::.::.|:..:.|..||..::::|
Zfish    89 LPQLLCPLWIFLDVLFSTASIMHLCAISLDRYIGIRNPFSISHTQSSRKAMIKIITVWTISIVLS 153

  Fly   222 L-APQFGWKDPDYMKRIEEQHCMVSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRA 285
            | .|..|.:|.  .|...:..|::::. .:.:..:...|:|||::::..|:    :....:|:.:
Zfish   154 LPIPVMGLQDE--QKVFIDCACVLNEP-RFILVGSIVAFFVPLVIMVVCYY----LTLHHLQKHS 211

  Fly   286 QKSFNVTLTETDCDSAVRELKKERSKRRAERKRLEAGERTPVDGDGTGGQLQRRTRKRMRICFGR 350
             |||                                    |.|...:              |...
Zfish   212 -KSF------------------------------------PHDSKSS--------------CMHS 225

  Fly   351 NTNTANVVAGSEGAVARSMAAIAVDFASLAITREETEFSTSNYDNKSHAGTELTTVSSDADDYRT 415
            :..|:                             :|.|..|...:|                   
Zfish   226 SIETS-----------------------------DTSFLNSKSSSK------------------- 242

  Fly   416 SNANEIITLSQQVAHATQHHLIASHLNAITPLAQSIAMGGVGCLTTTTPSEKALSGAGTVAGAVA 480
            .:|..:|..|                    ||                                 
Zfish   243 MSAFPVIKRS--------------------PL--------------------------------- 254

  Fly   481 GGSGSGSGEEGAGTEGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVI 545
                       ...:|.|..:                         :.||:|::.|.|:...|:|
Zfish   255 -----------KSRQGMNRAL-------------------------ENERRASKVLGIVFFLFLI 283

  Fly   546 CWLPFFVMALTMSLCKE-CE--IHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFKRIL 603
            .|.|||:..:..::|:: |.  :| .:..:|:|:||.:|.:||:|||:||..:|:||.|.|
Zfish   284 MWCPFFITNVLNAICRDNCSEYVH-KLLDIFVWVGYVSSGVNPLIYTLFNKTYRQAFARYL 343

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
5-HT1BNP_001137708.2 TM helix 1 92..118 CDD:320454 9/23 (39%)
TM helix 2 125..151 CDD:320454 12/25 (48%)
TM helix 3 163..193 CDD:320454 16/29 (55%)
TM helix 4 204..226 CDD:320454 7/22 (32%)
TM helix 5 247..276 CDD:320454 5/28 (18%)
7tm_GPCRs <525..599 CDD:475119 27/76 (36%)
TM helix 6 533..555 CDD:410628 8/21 (38%)
TM helix 7 567..592 CDD:410628 10/24 (42%)
7tmA_5-HT1A_invertebrates 91..>287 CDD:320454 62/195 (32%)
htr2cl2NP_001429473.1 None

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