DRSC/TRiP Functional Genomics Resources

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Protein Alignment 5-HT1B and or90j1

DIOPT Version :9

Sequence 1:NP_001137708.2 Gene:5-HT1B / 37191 FlyBaseID:FBgn0263116 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_001077338.1 Gene:or90j1 / 797763 ZFINID:ZDB-GENE-070806-32 Length:306 Species:Danio rerio


Alignment Length:194 Identity:41/194 - (21%)
Similarity:59/194 - (30%) Gaps:86/194 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 WL---LVKMIAMAVVLGLMILVTIIGNVFVIAAIILERNLQNVAN--YLVASLAVADLFVACLVM 144
            ||   |..|:...|||.|..|.....|....        ||||.:  |.|.|.||.::...|.| 
Zfish   138 WLMGALPGMLDFLVVLALRPLSFFTSNRICF--------LQNVFDFEYHVISHAVFNIVYMCSV- 193

  Fly   145 PLGAVYEISNGWIL--------------------------------GPELCDIWTSCDVLCCTAS 177
                       |:|                                |.:|         |.||.|
Zfish   194 -----------WVLLFYTYFKVLFSAKAAASEPAQAQKARRTILLHGVQL---------LLCTLS 238

  Fly   178 ILHLVAIAADRYWTVTNIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQ------FGWKDPDYMK 235
            :|..|   .|...|....||..        ::.:|.:   ::.|:.|:      :|.:|..:.|
Zfish   239 LLTTV---LDGALTSRFPDYRQ--------IIYYCTF---ILTSILPRLLSPLIYGLRDQTFKK 288

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
5-HT1BNP_001137708.2 7tm_1 107..>288 CDD:278431 32/169 (19%)
or90j1NP_001077338.1 7tm_4 19..>140 CDD:304433 1/1 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24247
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.100

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