DRSC/TRiP Functional Genomics Resources

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Protein Alignment 5-HT1B and htr1ab

DIOPT Version :9

Sequence 1:NP_001137708.2 Gene:5-HT1B / 37191 FlyBaseID:FBgn0263116 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_001139238.1 Gene:htr1ab / 797538 ZFINID:ZDB-GENE-090409-2 Length:403 Species:Danio rerio


Alignment Length:546 Identity:162/546 - (29%)
Similarity:239/546 - (43%) Gaps:161/546 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 NSNTFDLV--DDEQERAAVEFWLLVKM-----IAMAVVLGLMILVTIIGNVFVIAAIILERNLQN 123
            |::|..|.  |.:.:.......|.||:     |:.::::|.:||.:|.||..|:|||.|||:|||
Zfish     4 NNDTSFLFQNDSDLDHQTDNVTLPVKVPLSYQISTSLLIGALILCSIFGNACVVAAIALERSLQN 68

  Fly   124 VANYLVASLAVADLFVACLVMPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADR 188
            |||||:.||||.||.|:.||:|:.|:|::.:.|.||...|||:.|.|:||||:|||||.|||.||
Zfish    69 VANYLIGSLAVTDLMVSVLVLPMAALYQVLDKWTLGQVTCDIFISLDILCCTSSILHLCAIALDR 133

  Fly   189 YWTVTN-IDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVGYQI 252
            ||.:|: |||...||.:|..|:|...||....:|:.|..       :.:.:.:.||:|.|..|.|
Zfish   134 YWAITDPIDYMKKRTLKRAALLITVTWFVGFSISIPPML-------IMKSQPKTCMISHDPWYTI 191

  Fly   253 FATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCDSAVRELKKERSKRRAERK 317
            ::|.|.||:||:::|.||.:|:..||.||:                          ::.|:.|:|
Zfish   192 YSTFCAFYIPLILMLVLYGRIFKAARFRIR--------------------------KTVRKPEKK 230

  Fly   318 RLEAGERTPVDGDGTGGQLQRRTRKRMRICFGRNTNTANVVAGSEGAVARSMAAIAVDFASLAIT 382
            |::....:|.......|:|.:              |..:.|.....|........|.|..||.|.
Zfish   231 RVKCLTVSPALFKRANGELSK--------------NWKSAVEPKPAACVNGAIKHAEDGESLEII 281

  Fly   383 REETEFSTSNYDNKSHAGTELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNAITPL 447
                                         :..:::.|.:                        ||
Zfish   282 -----------------------------EVHSNSKNNL------------------------PL 293

  Fly   448 AQSIAMGGVGCLTTTTPSEKALSGAGTVAGAVAGGSGSGSGEEGAGTEGKNAGVGLGGVLASIAN 512
                         ..||:...|                                        ..|
Zfish   294 -------------PNTPNSVPL----------------------------------------FEN 305

  Fly   513 PHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPFFVMALTMSLCKECEIHTAVASLFLWLG 577
            .|:|..:.::.|...||||..:||.||.|.|::||||||:.||.|..|..|.:...:..:..|||
Zfish   306 KHEKNTEAKRKLALARERKTVKTLGIIMGTFILCWLPFFIKALVMPFCPTCVMPLWLQDVINWLG 370

  Fly   578 YFNSTLNPVIYTIFNPEFRRAFKRIL 603
            |.||.|||:||..||.:|:.|||:|:
Zfish   371 YSNSLLNPIIYAYFNKDFQSAFKKII 396

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
5-HT1BNP_001137708.2 7tm_1 107..>288 CDD:278431 86/181 (48%)
htr1abNP_001139238.1 7tm_4 46..>208 CDD:304433 82/168 (49%)
7tm_1 52..381 CDD:278431 141/481 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 279 1.000 Domainoid score I1659
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H136246
Inparanoid 1 1.050 305 1.000 Inparanoid score I2621
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D310620at33208
OrthoFinder 1 1.000 - - FOG0002041
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_104614
Panther 1 1.100 - - O PTHR24247
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
98.970

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