DRSC/TRiP Functional Genomics Resources

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Protein Alignment 5-HT1B and htr1b

DIOPT Version :9

Sequence 1:NP_001137708.2 Gene:5-HT1B / 37191 FlyBaseID:FBgn0263116 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_001122181.1 Gene:htr1b / 561647 ZFINID:ZDB-GENE-081022-141 Length:380 Species:Danio rerio


Alignment Length:546 Identity:156/546 - (28%)
Similarity:227/546 - (41%) Gaps:198/546 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 NSNTFDLV------DDEQERAAVEFWLLVKMIAMAVVLGLMILVTIIGNVFVIAAIILERNLQNV 124
            ||:|...|      |::||..|.:       :.::.||||:.|.||:.|.||||.|...|.||..
Zfish    18 NSSTGTNVTLTPKTDEKQESFAFQ-------VTLSSVLGLITLATILSNAFVIATISQSRKLQTP 75

  Fly   125 ANYLVASLAVADLFVACLVMPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRY 189
            ||:|:|||||.||.|:.||||:..:|.::..|.||..:||||.|.|:.|||||||||..||.|||
Zfish    76 ANFLIASLAVTDLLVSVLVMPICVLYTVTREWTLGQVICDIWLSSDITCCTASILHLCVIALDRY 140

  Fly   190 WTVTN-IDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQD-VGYQI 252
            |.:|: ::|...||..|...|:...|..|:.:|| |.|.|:.   :|..|...|.|:.| :.|.|
Zfish   141 WAITDAVEYAKKRTQARAAGMVATAWIIAISISL-PPFFWRQ---VKAGELTTCSVNTDHIFYTI 201

  Fly   253 FATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCDSAVRELKKERSKRRAERK 317
            ::|...||:|.|:::.||.:||:.|||||.:::.|.                             
Zfish   202 YSTFGAFYIPTLLLIALYGRIYVEARKRILKQSPKK----------------------------- 237

  Fly   318 RLEAGERTPVDGDGTGGQLQRRTRKRMRICFGRNTNTANVVAGSEGAVARSMAAIAVDFASLAIT 382
                    |                      |:...:|::...|..:||                
Zfish   238 --------P----------------------GKRLTSAHLSTNSPASVA---------------- 256

  Fly   383 REETEFSTSNYDNKSHAGTELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNAITPL 447
                  |||    ..|.|.:  .:.||:....:.|...:                          
Zfish   257 ------STS----PLHCGRQ--DLCSDSGSLGSDNQIRV-------------------------- 283

  Fly   448 AQSIAMGGVGCLTTTTPSEKALSGAGTVAGAVAGGSGSGSGEEGAGTEGKNAGVGLGGVLASIAN 512
                                      ||:.::                                 
Zfish   284 --------------------------TVSDSL--------------------------------- 289

  Fly   513 PHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPFFVMALTMSLCKECEIHTAVASLFLWLG 577
                |.|:|  :.|.|||||.:||.||.||:::||||||:..|.:.||..| ....:...|.|||
Zfish   290 ----LEKKR--ISAARERKATKTLGIILGAYIVCWLPFFIYTLLIPLCSSC-FSPELFDFFTWLG 347

  Fly   578 YFNSTLNPVIYTIFNPEFRRAFKRIL 603
            |.||.:||:|||:.|.:|::||.:::
Zfish   348 YVNSLINPIIYTMSNDDFKKAFHKVI 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
5-HT1BNP_001137708.2 7tm_1 107..>288 CDD:278431 83/182 (46%)
htr1bNP_001122181.1 7tm_1 59..358 CDD:278431 134/481 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D310620at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3253
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.950

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