DRSC/TRiP Functional Genomics Resources

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Protein Alignment 5-HT1B and htr1d

DIOPT Version :10

Sequence 1:NP_001137708.2 Gene:5-HT1B / 37191 FlyBaseID:FBgn0263116 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_001139158.1 Gene:htr1d / 556429 ZFINID:ZDB-GENE-090409-3 Length:386 Species:Danio rerio


Alignment Length:544 Identity:165/544 - (30%)
Similarity:237/544 - (43%) Gaps:175/544 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 NSNTFDLVDDEQERAAVEFW----LLVKMIAMAVVLGLMILVTIIGNVFVIAAIILERNLQNVAN 126
            :|:.|.|::.......:|.|    ||...|:::.:|.::.|.|.:.|.||||.|.|.|.|...||
Zfish     6 SSDEFFLINATVSPTTLESWDDATLLSLQISISAMLAIVTLATALSNAFVIATIFLTRKLHTPAN 70

  Fly   127 YLVASLAVADLFVACLVMPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWT 191
            :|:.|||..||.|:.||||:..||.:|..|.||..:||||.|.|:..||||||||..||.||||.
Zfish    71 FLIGSLAATDLLVSILVMPISIVYTVSKTWTLGQIVCDIWLSSDITFCTASILHLCVIALDRYWA 135

  Fly   192 VTN-IDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQD-VGYQIFA 254
            :|: ::|:..||.||..|||..||..::.:||.|.| |:.....:.:.|  |||:.| :.|.:::
Zfish   136 ITDALEYSKRRTMRRAALMIVIVWVISVSISLPPLF-WRQAKAHEELTE--CMVNTDQISYTLYS 197

  Fly   255 TCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCDSAVRELKKERSKRRAERKRL 319
            |...||||.::::.||.:||:.||.||                                      
Zfish   198 TFGAFYVPTVLLMILYGRIYVAARSRI-------------------------------------- 224

  Fly   320 EAGERTPVDGDGTGGQLQRRTRKRMRICFGRNTNTANVVAGSEGAVARSMAAIAVDFASLAITRE 384
               .:||...                   |:....|.::..|                       
Zfish   225 ---FKTPATS-------------------GKRFTAAQLIQNS----------------------- 244

  Fly   385 ETEFSTSNYDNKSHAGTELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQ 449
                          ||:.|.:::|      |||..                   .||||      
Zfish   245 --------------AGSSLCSLNS------TSNQE-------------------GHLNA------ 264

  Fly   450 SIAMGGVGCLTTTTPSEKALSGAGTVAGAVAGGSGSGSGEEGAGTEGKNAGVGLGGVLASIANPH 514
                                          .||.|||.|..|.|    .:.:....|...:|:  
Zfish   265 ------------------------------GGGGGSGGGGGGGG----GSPLFTNSVKVKLAD-- 293

  Fly   515 QKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYF 579
             .:.:|::|. |.||:||.:||.||.|||::|||||||..|.|.:||:|..|..:..:|.||||.
Zfish   294 -SVLERKRLC-AAREKKATKTLGIILGAFIVCWLPFFVFTLVMGVCKDCWYHPVLFDVFTWLGYL 356

  Fly   580 NSTLNPVIYTIFNPEFRRAFKRIL 603
            ||.:||||||.||.:|::||.:::
Zfish   357 NSLINPVIYTAFNDDFKQAFHKLI 380

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
5-HT1BNP_001137708.2 TM helix 1 92..118 CDD:320454 9/25 (36%)
TM helix 2 125..151 CDD:320454 14/25 (56%)
TM helix 3 163..193 CDD:320454 20/29 (69%)
TM helix 4 204..226 CDD:320454 10/21 (48%)
TM helix 5 247..276 CDD:320454 11/29 (38%)
7tm_GPCRs <525..599 CDD:475119 41/73 (56%)
TM helix 6 533..555 CDD:410628 14/21 (67%)
TM helix 7 567..592 CDD:410628 13/24 (54%)
7tmA_5-HT1A_invertebrates 91..>287 CDD:320454 87/197 (44%)
htr1dNP_001139158.1 7tmA_5-HT1B_1D 31..376 CDD:320455 157/513 (31%)
TM helix 1 36..62 CDD:320455 9/25 (36%)
TM helix 2 69..95 CDD:320455 14/25 (56%)
TM helix 3 107..137 CDD:320455 20/29 (69%)
TM helix 4 149..172 CDD:320455 11/23 (48%)
TM helix 5 190..219 CDD:320455 10/28 (36%)
TM helix 6 304..334 CDD:320455 19/29 (66%)
TM helix 7 344..369 CDD:320455 13/24 (54%)

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