DRSC/TRiP Functional Genomics Resources

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Protein Alignment 5-HT1B and ser-2

DIOPT Version :9

Sequence 1:NP_001137708.2 Gene:5-HT1B / 37191 FlyBaseID:FBgn0263116 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_001024339.1 Gene:ser-2 / 182110 WormBaseID:WBGene00004777 Length:455 Species:Caenorhabditis elegans


Alignment Length:535 Identity:151/535 - (28%)
Similarity:238/535 - (44%) Gaps:137/535 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    88 VKMIAMAVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYEI 152
            |:::...:...::|.:|::||..|:.|:...|.|:.|.||.:.|||.:||.||..||||..|..:
 Worm    55 VELVLGTITYLVIIAMTVVGNTLVVVAVFSYRPLKKVQNYFLVSLAASDLAVAIFVMPLHVVTFL 119

  Fly   153 SNG-WILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTN-IDYNNLRTPRRVFLMIFCVWF 215
            :.| |:||..:|..:|:.|:|.||:|||:|.|||.||||.:.| |:|...||.:.|.::|..||.
 Worm   120 AGGKWLLGVTVCQFFTTADILLCTSSILNLCAIALDRYWAIHNPINYAQKRTTKFVCIVIVIVWI 184

  Fly   216 AALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKR 280
            .::::|:.|..||.  ::.:.:.|..|.:|.:..:.:|:...:|::||||::.:|.||:|.||:|
 Worm   185 LSMLISVPPIIGWN--NWQENMMEDSCGLSTEKAFVVFSAAGSFFLPLLVMVVVYVKIFISARQR 247

  Fly   281 IQRRAQKSFNVTLTETDCDSAVRELKKERSKRRAERKRLEAGERTPVDGDGTGGQLQRRTRKRMR 345
            |:....:|..:.:...:.|...|::..:|:...:.|.....||:||:                  
 Worm   248 IRTNRGRSALMRIQNAEGDDDYRKMSIKRASVESARTSSRVGEKTPL------------------ 294

  Fly   346 ICFGRNTNTANVVAGSEGAVARSMAAIAVDFASLAITREETEFSTSNYDNKSHAGTELTTVSSDA 410
                       |:|..:..|. ::||.:.|..||  .::||. ....|.|......::..|..| 
 Worm   295 -----------VIADGQTTVT-TLAAHSTDGGSL--PKDETT-KHMKYHNNGSCKVKVKDVKED- 343

  Fly   411 DDYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQSIAMGGVGCLTTTTPSEKALSGAGTV 475
                                                                             
 Worm   344 ----------------------------------------------------------------- 343

  Fly   476 AGAVAGGSGSGSGEEGAGTEGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIIT 540
                               ||.             .||...|.||.::..|| |::||:|:|:|.
 Worm   344 -------------------EGN-------------PNPTAVLRKREKISVAK-EKRAAKTIAVII 375

  Fly   541 GAFVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFKRILFG 605
            ..|..|||||||..:....|:.|::|..|...|.||||.||:|||.:|.|.|.|||||||:||. 
 Worm   376 FVFSFCWLPFFVAYVIRPFCETCKLHAKVEQAFTWLGYINSSLNPFLYGILNLEFRRAFKKILC- 439

  Fly   606 RKAAARARSAKIXFQ 620
            .||....|..:: .|
 Worm   440 PKAVLEQRRRRMSAQ 454

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
5-HT1BNP_001137708.2 7tm_1 107..>288 CDD:278431 72/182 (40%)
ser-2NP_001024339.1 7tm_1 74..423 CDD:278431 132/482 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002041
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_104614
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3253
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.840

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