DRSC/TRiP Functional Genomics Resources

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Protein Alignment 5-HT1B and dop-1

DIOPT Version :10

Sequence 1:NP_001137708.2 Gene:5-HT1B / 37191 FlyBaseID:FBgn0263116 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_001370620.1 Gene:dop-1 / 180714 WormBaseID:WBGene00001052 Length:460 Species:Caenorhabditis elegans


Alignment Length:531 Identity:140/531 - (26%)
Similarity:218/531 - (41%) Gaps:146/531 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 WLLVKMIAMAVVLGLMILVTIIGNVFVIAAIILERNL-QNVANYLVASLAVADLFVACLVMPLGA 148
            |.|:.:.::.::|.|      .||:.|.|||:.:|:| :...|..:.||||:||.|:.|||...|
 Worm     6 WPLLGLFSVLIILAL------FGNLLVCAAILWDRSLRKQPENLFLVSLAVSDLLVSVLVMLFAA 64

  Fly   149 VYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTN----IDYNNLRTPRRVFLM 209
            |.:|...|..|...|..|.|.|:..||||||:|.||:.||||.::.    |.|.|   .||:..:
 Worm    65 VNDILGYWPFGQFYCQFWISFDITTCTASILNLCAISLDRYWHISRPMVYIRYCN---RRRINYV 126

  Fly   210 IFCVWFAALIVSLAP-QFGWKDPDYMKRIEE-QHCMVSQDVGYQIFATCCTFYVPLLVILFLYWK 272
            |..||..:..:..|| .||:.....:..:.. ..|.:...:.|.|.::..:|::|.:|::.||.|
 Worm   127 IVLVWLISAGIGAAPLGFGFGSKVTINNLTGLPVCEMRLPLPYAIGSSMVSFFLPAMVMVILYTK 191

  Fly   273 IYIIARKRIQRRAQKSFNVTLTETDCDSAVRELKKERSKRRAERKRLEAGERTPVDGDGTGGQLQ 337
            :|:.|||.:     :|....|.:. ....:.:|..|:. |......|:.....|.|...|     
 Worm   192 LYLYARKHV-----RSIKTQLQQA-TSFLIMQLASEKI-REVTAATLKGEALLPPDSPAT----- 244

  Fly   338 RRTRKRMRICFGRNTNTANVVAGSEGAVARSMAAIAVDFASLAITREETEFSTSNYDNKSHAGTE 402
            .||                                     ::.::|..:..||          |.
 Worm   245 ERT-------------------------------------TMTVSRHYSRRST----------TT 262

  Fly   403 LTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQSIAMGGVGCLTTTTPSEK 467
            .||.:....|.:||:.|::.::...         |.|.||.:.|                     
 Worm   263 TTTATPRRGDKKTSSQNKVESIRTS---------IFSKLNFLCP--------------------- 297

  Fly   468 ALSGAGTVAGAVAGGSGSGSGEEGAGTEGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKA 532
                                      |..||.        .|..:||...|..|..:.   ::||
 Worm   298 --------------------------TRFKNQ--------RSPQDPHTPAAHNRSNIS---DQKA 325

  Fly   533 AQTLAIITGAFVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRR 597
            ..||.:|.|.|::||||||.:.:..:...|......:.:: .||||.||:.||:||:|||.:|||
 Worm   326 RLTLGVIMGTFLVCWLPFFTVNILRAWLPEIFSSKTIMAV-TWLGYANSSANPLIYSIFNRDFRR 389

  Fly   598 AFKRIL---FG 605
            |||:|:   ||
 Worm   390 AFKKIIVRVFG 400

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
5-HT1BNP_001137708.2 TM helix 1 92..118 CDD:320454 8/25 (32%)
TM helix 2 125..151 CDD:320454 13/25 (52%)
TM helix 3 163..193 CDD:320454 17/29 (59%)
TM helix 4 204..226 CDD:320454 7/22 (32%)
TM helix 5 247..276 CDD:320454 9/28 (32%)
7tm_GPCRs <525..599 CDD:475119 30/73 (41%)
TM helix 6 533..555 CDD:410628 11/21 (52%)
TM helix 7 567..592 CDD:410628 11/24 (46%)
7tmA_5-HT1A_invertebrates 91..>287 CDD:320454 68/202 (34%)
dop-1NP_001370620.1 7tmA_Ap5-HTB1-like 7..391 CDD:320193 133/519 (26%)
TM helix 1 7..33 CDD:320193 9/31 (29%)
TM helix 2 41..67 CDD:320193 13/25 (52%)
TM helix 3 79..109 CDD:320193 17/29 (59%)
TM helix 4 121..143 CDD:320193 7/21 (33%)
TM helix 5 166..195 CDD:320193 9/28 (32%)
TM helix 6 320..350 CDD:320193 13/32 (41%)
TM helix 7 359..384 CDD:320193 11/25 (44%)

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