DRSC/TRiP Functional Genomics Resources

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Protein Alignment 5-HT1B and ser-4

DIOPT Version :10

Sequence 1:NP_001137708.2 Gene:5-HT1B / 37191 FlyBaseID:FBgn0263116 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_497452.1 Gene:ser-4 / 175322 WormBaseID:WBGene00004779 Length:445 Species:Caenorhabditis elegans


Alignment Length:523 Identity:174/523 - (33%)
Similarity:249/523 - (47%) Gaps:140/523 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 LVKMIAMAVVLGLMILVTIIGNVFVIAAIILERNLQNVAN-YLVASLAVADLFVACLVMPLGAVY 150
            ||:.:.:|.||.::||...|||:|||.|||:||:|:.... ||:.|||||||.|..:|.||||.:
 Worm    48 LVQTVILASVLLVLILSCFIGNLFVILAIIMERDLRGRPQYYLIFSLAVADLLVGMIVTPLGAWF 112

  Fly   151 EISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYNNLRTPRRVFLMIFCVWF 215
            .::..|.||..:||.|.|.|||.||||||||||||.||||::|:|.|...|||:|:.||:..:||
 Worm   113 TVTGTWNLGVVVCDFWISVDVLVCTASILHLVAIALDRYWSITDICYVQNRTPKRITLMLAVIWF 177

  Fly   216 AALIVSLAPQFGWKDPDYMKRIEEQH-CMVSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARK 279
            .:|::||||..||||..:..|:.:.| |::||.:.||:|:|...||:||:.|:.:||||...|:|
 Worm   178 TSLLISLAPFAGWKDEGFSDRVLKSHVCLISQQISYQVFSTATAFYIPLIAIICVYWKIMRAAKK 242

  Fly   280 RIQRRAQKSFNVTLTETDCDSAVRELKKERSKRRAERKRLEAGERTPVDGDGTGGQLQRRTRKRM 344
            |.:|...:.   |:.....| |:.|.|....|:..:.....|...:.:..:|..|          
 Worm   243 RFKRERDRR---TVIRPPPD-AIDEKKAMMPKKSKKCPLPPAVVISDIQANGGTG---------- 293

  Fly   345 RICFGRNTNTANVVAGSEGAVARSMAAIAVDFASLAITREETEFSTSNYDNKSHAGTELTTVSSD 409
                |:..:..|....:|              :|.:.:.||...:.:|     ||..::||..:.
 Worm   294 ----GKTNSIKNPPRHNE--------------SSSSASEEERTMTQTN-----HAPGDVTTQETK 335

  Fly   410 ADDYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQSIAMGGVGCLTTTTPSEKALSGAGT 474
            .|:                                                              
 Worm   336 IDE-------------------------------------------------------------- 338

  Fly   475 VAGAVAGGSGSGSGEEGAGTEGKNAGVGLGGVLASIANPHQKLAKRRQLL----EAKRERKAAQT 535
                          |.|....|                    :.|||:..    |.||||||.:|
 Worm   339 --------------ENGRSKPG--------------------IVKRRRRTKESNEMKRERKAWRT 369

  Fly   536 LAIITGAFVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFK 600
            ||||||.||.||.|||::::...:| .|:|...:..:.|||||.||.|||:|||:|:.:||.|||
 Worm   370 LAIITGTFVACWTPFFLVSIYRPIC-GCQISPVLEQVTLWLGYLNSALNPIIYTVFSQDFRAAFK 433

  Fly   601 RIL 603
            ||:
 Worm   434 RII 436

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
5-HT1BNP_001137708.2 TM helix 1 92..118 CDD:320454 14/25 (56%)
TM helix 2 125..151 CDD:320454 15/26 (58%)
TM helix 3 163..193 CDD:320454 23/29 (79%)
TM helix 4 204..226 CDD:320454 10/21 (48%)
TM helix 5 247..276 CDD:320454 13/28 (46%)
7tm_GPCRs <525..599 CDD:475119 40/73 (55%)
TM helix 6 533..555 CDD:410628 14/21 (67%)
TM helix 7 567..592 CDD:410628 13/24 (54%)
7tmA_5-HT1A_invertebrates 91..>287 CDD:320454 100/197 (51%)
ser-4NP_497452.1 7tmA_5-HT1A_invertebrates 52..432 CDD:320454 167/513 (33%)
TM helix 1 53..79 CDD:320454 14/25 (56%)
TM helix 2 87..113 CDD:320454 15/25 (60%)
TM helix 3 125..155 CDD:320454 23/29 (79%)
TM helix 4 166..188 CDD:320454 10/21 (48%)
TM helix 5 210..239 CDD:320454 13/28 (46%)
TM helix 6 361..391 CDD:320454 20/29 (69%)
TM helix 7 400..425 CDD:320454 13/24 (54%)

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