DRSC/TRiP Functional Genomics Resources

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Protein Alignment 5-HT1B and LOC101885642

DIOPT Version :9

Sequence 1:NP_001137708.2 Gene:5-HT1B / 37191 FlyBaseID:FBgn0263116 Length:629 Species:Drosophila melanogaster
Sequence 2:XP_005158304.1 Gene:LOC101885642 / 101885642 -ID:- Length:353 Species:Danio rerio


Alignment Length:258 Identity:54/258 - (20%)
Similarity:92/258 - (35%) Gaps:75/258 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 IAMAVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYEIS-- 153
            |.|.|.:..:||..:.||:..:|.:...::......||.||||||||.|...|:|:....|||  
Zfish    19 IFMVVFMISLILAILFGNLLTLAVVSGTKHFHTPQGYLKASLAVADLAVGVFVVPISVYTEISLM 83

  Fly   154 --NGWILGPELCDIWTS----------CDVL------CCTASILHLVAIAADRYWTVTN-IDYNN 199
              |..   ||    ||:          |..:      |...||..:..:..:|...|.. :...:
Zfish    84 VYNSM---PE----WTTRNSQTSPFHPCSFIGPVFAGCTLVSITTIFLLTIERSIAVLKPLHKES 141

  Fly   200 LRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVG--YQIFATCCTFYVP 262
            :.|.:|..::|...|..:..::::|.                 :.|.::.  |...:..|.:.:.
Zfish   142 VITKKRTSILIVFSWMGSFFLAISPM-----------------VFSNEIALEYNPCSRMCNYALG 189

  Fly   263 LLVILFLYWKIYII----------------------ARKRIQRRAQKSFNVTLTETDCDSAVR 303
            ........|||.::                      .|:..:||..      |.||:..||.:
Zfish   190 SADFPSRAWKILLLFPAFDFTLLGGTVVINIISLTTIRQHSKRRKH------LAETENQSATK 246

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
5-HT1BNP_001137708.2 7tm_1 107..>288 CDD:278431 44/225 (20%)
LOC101885642XP_005158304.1 7tm_4 24..>231 CDD:304433 44/230 (19%)
7tm_1 35..307 CDD:278431 49/242 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24247
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.100

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