DRSC/TRiP Functional Genomics Resources

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Protein Alignment 5-HT1B and htr1b

DIOPT Version :9

Sequence 1:NP_001137708.2 Gene:5-HT1B / 37191 FlyBaseID:FBgn0263116 Length:629 Species:Drosophila melanogaster
Sequence 2:XP_002936251.2 Gene:htr1b / 100495915 XenbaseID:XB-GENE-988006 Length:385 Species:Xenopus tropicalis


Alignment Length:566 Identity:151/566 - (26%)
Similarity:235/566 - (41%) Gaps:193/566 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 NLTQLVDTTSNLSQIVWNRSINGNGNSNTFDLVDDEQERAAVEFWLLVKMIAMAVVLGLMILVTI 105
            :||:..:.|..|:....|.|.:|.....:.|....|..       |....|.:.|:|.|:.|.|:
 Frog     3 HLTECQEVTDQLNVSQTNYSFDGRSCITSLDSYGQEDV-------LSFSKIILTVILALITLATL 60

  Fly   106 IGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYEISNGWILGPELCDIWTSCD 170
            :.|.|||..:...|.|...||||:||||..||.|:.||:|:..||.::..|.||..:||:|.|.|
 Frog    61 LSNAFVITTVYQTRKLHTPANYLIASLAFTDLLVSILVLPIAIVYTVTGKWTLGQIICDMWLSSD 125

  Fly   171 VLCCTASILHLVAIAADRYWTVTN-IDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYM 234
            :.|||||||||..||.||||.:|: ::|...|||:|..:||..||..::.:|:.|.| |:.   .
 Frog   126 ITCCTASILHLCVIALDRYWAITDAVEYTKKRTPKRAVVMIALVWVFSISISMPPLF-WRQ---S 186

  Fly   235 KRIEEQHCMVSQD-VGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDC 298
            |..|...|.|:.| :.|.:::|...||:|.|:::.||.:||:.||.||.:::.|:          
 Frog   187 KAEEIAVCAVNTDHILYTVYSTVGAFYIPTLLLIALYGRIYVEARSRILKQSPKT---------- 241

  Fly   299 DSAVRELKKERSKRRAERKRLEAGERTPVDGDGTGGQLQRRTRKRMRICFGRNTNTANVVAGSEG 363
                                                     |.||:                   
 Frog   242 -----------------------------------------TGKRL------------------- 246

  Fly   364 AVARSMAAIAVDFASLAITREETEFSTSNYDNKSHAGTELTTVSSDADDYRTSNANEIITLSQQV 428
                                                                             
 Frog   247 ----------------------------------------------------------------- 246

  Fly   429 AHATQHHLIASHLNAITPLAQSIAMGGVGCLTTTTPSEKALSGAGTVAGAVAGGSGSGSGEEGAG 493
               |:.|||                       |.:|...::|...:....:...:||        
 Frog   247 ---TKAHLI-----------------------TDSPGSSSVSSTNSRTLEMPSDAGS-------- 277

  Fly   494 TEGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPFFVMALTMS 558
                  .|.|..|...:::   .|.:::::: |.|||||.:||.:|.||:::||||||:::|.|.
 Frog   278 ------PVYLNQVKVKVSD---ALLEKKKIM-AARERKATKTLGVILGAYIVCWLPFFIISLVMP 332

  Fly   559 LCKE-CEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFKRIL 603
            :||: |..|.|:...|.||||.||.:||:|||:.|.:|::||.:::
 Frog   333 ICKDACWFHPAIFDFFNWLGYLNSLINPIIYTMSNEDFKQAFHKLI 378

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
5-HT1BNP_001137708.2 7tm_1 107..>288 CDD:278431 78/182 (43%)
htr1bXP_002936251.2 7tmA_5-HT1B_1D 42..374 CDD:320455 139/514 (27%)
TM helix 1 47..73 CDD:320455 9/25 (36%)
TM helix 2 80..106 CDD:320455 15/25 (60%)
TM helix 3 118..148 CDD:320455 20/29 (69%)
TM helix 4 160..183 CDD:320455 8/23 (35%)
TM helix 5 200..229 CDD:320455 10/28 (36%)
TM helix 6 301..331 CDD:320455 17/29 (59%)
TM helix 7 342..367 CDD:320455 13/24 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D310620at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3253
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.950

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