DRSC/TRiP Functional Genomics Resources

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Protein Alignment 5-HT1B and LOC100488258

DIOPT Version :10

Sequence 1:NP_001137708.2 Gene:5-HT1B / 37191 FlyBaseID:FBgn0263116 Length:629 Species:Drosophila melanogaster
Sequence 2:XP_012818683.1 Gene:LOC100488258 / 100488258 XenbaseID:XB-GENE-29079119 Length:333 Species:Xenopus tropicalis


Alignment Length:556 Identity:115/556 - (20%)
Similarity:176/556 - (31%) Gaps:263/556 - (47%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 FDLVDD---EQERAAVEFWLLVKMIAMAVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVAS 131
            ||.|::   ...||...:  .|..|||   .|.:||.| :||:.||.:|...|.|....|:|:.|
 Frog     5 FDFVNNSCLRTNRAPANY--SVMFIAM---FGAIILTT-VGNLLVIISISHFRQLHYPTNFLILS 63

  Fly   132 LAVADLFVACLVMPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTN-- 194
            ||.||..:..:|||...|..:::.|..|...|.:.:..|:..||.||.||..|:.|||:.|.:  
 Frog    64 LATADFLIGLVVMPYSMVRSLTSCWYFGDLFCKVHSCLDMTLCTGSIYHLFFISVDRYYAVCHPL 128

  Fly   195 IDYNNLRT-PRRVFLM----IFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVGYQ--- 251
            ..|.||.| ...:||:    :.||:...|:.|.....|.:|     .|...:|:.|..:...   
 Frog   129 HYYKNLTTNVIELFLLTTWSVSCVFSFGLVFSNVHTEGIQD-----YITSYYCIGSCSLTLNKLW 188

  Fly   252 --IFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCDSAVRELKKERSKRRA 314
              |.:..| |::|..:::.:|..|:.:||                                    
 Frog   189 GTISSLIC-FFIPGALMIGIYMHIFSVAR------------------------------------ 216

  Fly   315 ERKRLEAGERTPVDGDGTGGQLQRRTRKRMRICFGRNTNTANVVAGSEGAVARSMAAIAVDFASL 379
                                                  |.|.:|                     
 Frog   217 --------------------------------------NQAKLV--------------------- 222

  Fly   380 AITREETEFSTSNYDNKSHAGTELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNAI 444
                                                              |  .||       :.
 Frog   223 --------------------------------------------------H--NHH-------SF 228

  Fly   445 TPLAQSIAMGGVGCLTTTTPSEKALSGAGTVAGAVAGGSGSGSGEEGAGTEGKNAGVGLGGVLAS 509
            .|                                                               
 Frog   229 QP--------------------------------------------------------------- 230

  Fly   510 IANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPFFVMA-----LTMSLCKECEIHTAV 569
                    .|.:..:..:.|||||:||:|:.|.|:.||||||::.     :..|:.::      :
 Frog   231 --------DKSKSKISVRAERKAAKTLSIVMGVFLFCWLPFFILTVIDPYINFSVPED------L 281

  Fly   570 ASLFLWLGYFNSTLNPVIYTIFNPEFRRAFKRILFG 605
            .::|||||||||.|||:||.:|.|.|::||..|:.|
 Frog   282 YNVFLWLGYFNSALNPIIYALFYPWFQKAFACIISG 317

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
5-HT1BNP_001137708.2 TM helix 1 92..118 CDD:320454 11/25 (44%)
TM helix 2 125..151 CDD:320454 11/25 (44%)
TM helix 3 163..193 CDD:320454 12/29 (41%)
TM helix 4 204..226 CDD:320454 6/25 (24%)
TM helix 5 247..276 CDD:320454 6/33 (18%)
7tm_GPCRs <525..599 CDD:475119 34/78 (44%)
TM helix 6 533..555 CDD:410628 12/26 (46%)
TM helix 7 567..592 CDD:410628 14/24 (58%)
7tmA_5-HT1A_invertebrates 91..>287 CDD:320454 63/207 (30%)
LOC100488258XP_012818683.1 7tmA_TAAR2_3_4 23..311 CDD:320437 106/528 (20%)
TM helix 1 24..50 CDD:320437 13/29 (45%)
TM helix 2 57..83 CDD:320437 11/25 (44%)
TM helix 3 95..125 CDD:320437 12/29 (41%)
TM helix 4 137..160 CDD:320437 5/22 (23%)
TM helix 5 185..214 CDD:320437 6/29 (21%)
TM helix 6 240..270 CDD:320437 16/29 (55%)
TM helix 7 279..304 CDD:320437 14/30 (47%)

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