DRSC/TRiP Functional Genomics Resources

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Protein Alignment tn and AT4G01350

DIOPT Version :9

Sequence 1:NP_001137707.1 Gene:tn / 37190 FlyBaseID:FBgn0265356 Length:1517 Species:Drosophila melanogaster
Sequence 2:NP_192044.2 Gene:AT4G01350 / 828015 AraportID:AT4G01350 Length:652 Species:Arabidopsis thaliana


Alignment Length:152 Identity:32/152 - (21%)
Similarity:45/152 - (29%) Gaps:67/152 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 PKLLPCQHSFCMEPCMEGLVDYVRRQVKCPEC------------------RAEHRIPYNGVQAFP 66
            |:.:||....|.:.|...:  ||     ||:|                  |.:|||         
plant   245 PRRIPCICDICGKKCEFAV--YV-----CPQCDFVTARGCIDLARVININRHDHRI--------- 293

  Fly    67 TNVTLQRFLELHIEITGELPDPTSGQIMERCGVCSEK------AYLSHCAHCEKKICEDCKSAHM 125
                   :|..|:           |....:||||.|.      ||  .|:.|.........:...
plant   294 -------YLTHHL-----------GTGYSKCGVCHENVNQYKGAY--SCSVCPHYAVHSTCAVRT 338

  Fly   126 DIL-------RREITRFNSQIR 140
            |:.       ..|||..||..:
plant   339 DVWDGVELEGTTEITEDNSPFK 360

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tnNP_001137707.1 RING 9..54 CDD:238093 11/51 (22%)
zf-B_box 94..>122 CDD:279037 9/33 (27%)
iSH2_PI3K_IA_R 131..231 CDD:304922 5/10 (50%)
NHL_TRIM71_like 1234..1517 CDD:271324
YncE 1253..>1517 CDD:225926
NHL repeat 1258..1297 CDD:271324
WD40 repeat 1261..1304 CDD:293791
NHL repeat 1305..1344 CDD:271324
WD40 repeat 1345..1377 CDD:293791
NHL repeat 1352..1388 CDD:271324
NHL repeat 1396..1436 CDD:271324
WD40 repeat 1402..1439 CDD:293791
NHL repeat 1445..1475 CDD:271324
WD40 repeat 1446..1485 CDD:293791
NHL repeat 1491..1517 CDD:271324
AT4G01350NP_192044.2 C1_3 391..420 CDD:284959
C1_2 551..581 CDD:281148
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D489543at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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