DRSC/TRiP Functional Genomics Resources

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Protein Alignment tn and Rnf207

DIOPT Version :9

Sequence 1:NP_001137707.1 Gene:tn / 37190 FlyBaseID:FBgn0265356 Length:1517 Species:Drosophila melanogaster
Sequence 2:XP_001075996.1 Gene:Rnf207 / 691246 RGDID:1586262 Length:635 Species:Rattus norvegicus


Alignment Length:670 Identity:141/670 - (21%)
Similarity:227/670 - (33%) Gaps:187/670 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LTCCVCLDRYRIPKLLPCQHSFCMEPCMEGLVDYVRRQVKCPECRAEHRIPYNGVQAFPTNVTLQ 72
            |.|.:|..:|..|.||.|.|.|| ..|:.|.....|  :.||.|  :|:....|....|   ...
  Rat    23 LVCPLCHTQYEHPCLLDCFHDFC-AGCLRGRATDGR--LSCPLC--QHQTLVKGPSGLP---PAD 79

  Fly    73 RFLELHIEITGELPDPTSGQIMERCGVC--------SEKAYLSHCAHCEKKICEDCKSAHMDILR 129
            |.|:..::.:|:      |.....|..|        :|..|.  |..|.:.:|..|        |
  Rat    80 RLLQFLVDSSGD------GIEAVHCANCDLECSKQDAETTYF--CNTCGQPLCARC--------R 128

  Fly   130 REITRFNSQIRRSLHRL-QDSLAIIEKNTMSLQTNAISVTEEIDEIYQRITKAIKDRSDQLKGEI 193
            .|..|.....|..:..| |.|...|:|..:..:...:..|::...:..|..:       .::|| 
  Rat   129 EETHRARMFARHDIVALGQRSRDFIQKCKLHSEPYIVFSTDKKSLLCIRCFR-------DMQGE- 185

  Fly   194 DRYLAVELRNLTTLK-ENLDLEITNI------TSNCDTVDKYMNETVEWDDCE------------ 239
            .|...|:|.:..... |.|:..:..:      |.....:.:.|.|.|.....|            
  Rat   186 SRAHCVDLESAYVQGCERLEQAVLAVKALQTATKEAIALLQAMVEEVRHSAAEEEAAIHALFGSM 250

  Fly   240 ---LMDTKEIFLKTVEFLRHFEYENND--YSRRVRFLVSIDPNQLV--------MNLAT---FGD 288
               |.:.|.:.|:||:    .:||..|  :..::..|.|:.|...|        ::||:   |.|
  Rat   251 QDRLAERKALLLQTVQ----SQYEEKDKAFKEQLTHLASLLPTLQVHLVICSSFLSLASKAEFLD 311

  Fly   289 LNIAPHSTPSGGSVSSSHLAPPSALQPGLMRSK--SDHRLATQFRQQEERSGYNDEPVL------ 345
            |.........|      .:..|..|:|. ..||  ||||  .:|.:..       ||:|      
  Rat   312 LGYELMERLQG------IVTRPHRLRPA-QSSKIASDHR--AEFARCL-------EPLLLLGPRR 360

  Fly   346 -----GGRKF---GERPQRSATQANNDRYGRSGGDYDYENDYDNEGSSGRAGKSSRFRSRFVRSH 402
                 ||...   |..|:...||:.....|:.            .||..:.....||.|..|...
  Rat   361 AVSTVGGANTLAGGSSPKVLKTQSCPSPVGKM------------SGSPVQKPSPHRFISTKVLLA 413

  Fly   403 QNDDS-------DSEQQQQQRQQELKERKDRVLD-SEDVSRGQLSGIIRLSDCSRVVQR--LADI 457
            :.:|:       ..|...:..|.|::..||:|.: ..|:::..  .:|:......::.|  |.| 
  Rat   414 EGEDTPFTEHCRHYEDSYRGLQLEVQNLKDQVQELHRDLTKHH--SLIKAEIMGDILHRSLLLD- 475

  Fly   458 GKEKKEKKSDAAAAAQAAVQAAIQAQKAAMQRQQQKNQQNAADEEE--------LARQKRKNAGS 514
                         ...|:..|:::..:|..|...:.:.|..|.::|        |.:.|::||  
  Rat   476 -------------TRIASEYASMEGMRAIFQEIWEDSYQRVATQQEIYEAQLHDLLQLKQENA-- 525

  Fly   515 SSTGGAATSTSSGGGDTASDQRVAALKNR--------GGEESDGSSN-QAASPVRNSAASTTRAE 570
                ...|.|..   .|...:.:|.:|.|        ..|.|:...| ...:|.|.....|    
  Rat   526 ----YLTTITKQ---ITPYIRSIARVKERLEPRFQGPVAEHSEHRQNLYDETPARTDPGCT---- 579

  Fly   571 VSVNEANTEEEGVASESSDS 590
                   ||:...|||.|.|
  Rat   580 -------TEKRDKASEPSGS 592

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tnNP_001137707.1 RING 9..54 CDD:238093 16/44 (36%)
zf-B_box 94..>122 CDD:279037 8/35 (23%)
iSH2_PI3K_IA_R 131..231 CDD:304922 19/107 (18%)
NHL_TRIM71_like 1234..1517 CDD:271324
YncE 1253..>1517 CDD:225926
NHL repeat 1258..1297 CDD:271324
WD40 repeat 1261..1304 CDD:293791
NHL repeat 1305..1344 CDD:271324
WD40 repeat 1345..1377 CDD:293791
NHL repeat 1352..1388 CDD:271324
NHL repeat 1396..1436 CDD:271324
WD40 repeat 1402..1439 CDD:293791
NHL repeat 1445..1475 CDD:271324
WD40 repeat 1446..1485 CDD:293791
NHL repeat 1491..1517 CDD:271324
Rnf207XP_001075996.1 RING 25..65 CDD:238093 16/44 (36%)
zf-B_box 100..145 CDD:279037 11/54 (20%)
iSH2_PI3K_IA_R 202..321 CDD:304922 24/122 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D489543at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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