DRSC/TRiP Functional Genomics Resources

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Protein Alignment tn and trim71

DIOPT Version :10

Sequence 1:NP_001137707.1 Gene:tn / 37190 FlyBaseID:FBgn0265356 Length:1517 Species:Drosophila melanogaster
Sequence 2:NP_001288260.1 Gene:trim71 / 561754 ZFINID:ZDB-GENE-040128-1 Length:813 Species:Danio rerio


Alignment Length:405 Identity:138/405 - (34%)
Similarity:203/405 - (50%) Gaps:51/405 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly  1149 SSSAAASSSHAHGYG--SGTSGSSGRSTA----SDVSRRLSLG-----LPLRQANELASSDDDGS 1202
            ||.|.|::|.|||.|  ....|.....|.    .|...|||.|     :.:.....|:|::....
Zfish   424 SSGAFATASKAHGEGIKRALQGKPASFTVVGYDHDGEPRLSGGDSVSVVLMSPDGNLSSAEVSDH 488

  Fly  1203 KNGL-------------------------GSPTSPTVAAAVAAAGITGAAGTIPKQVYLRKRQQL 1242
            ::|.                         |||....|.:..:..|:     .:|          :
Zfish   489 QDGTYTVSYLPKGEGEHLLSVLICNQHIEGSPFKVMVKSGRSYGGV-----GLP----------M 538

  Fly  1243 FQLGGRGSEPGSFTWPRGLAVGPDNSIVVADSSNHRVQVFDSNGIFVKEFGEYGNGEGEFDCLAG 1307
            ...||.|...|....|.|:.|..:..:||||.||:|||:|...|.|..:||..|:..|:||..||
Zfish   539 ASFGGEGDGDGQLCRPWGICVDKEGYVVVADRSNNRVQIFKPCGTFHHKFGTLGSRPGQFDRPAG 603

  Fly  1308 VAVNRIGQYIIADRYNHRIQVLDPQGRFLRAFGSQGTADGKFNYPWGVTTDALGFIYVCDKENHR 1372
            ||.:...:.|:||:.|||||:....|:||..||.:||.:|:|||||.|..:..|.|.|.|..|||
Zfish   604 VACDSQRRIIVADKDNHRIQIFTFDGQFLLKFGEKGTKNGQFNYPWDVAVNFEGKILVSDTRNHR 668

  Fly  1373 VQVFQSDGSFVGKFGSCGRGEGQLEHPHYIAVSNTNRVIVSDSNNHRIQIFDVNGKVLSTVGGEG 1437
            ||:|..||:|:.|:|..|......:.|..:|.:....::|:|.||||:.:...:.:....:|.||
Zfish   669 VQLFGPDGTFLNKYGFEGALWKHFDSPRGVAFNQEGHLVVTDFNNHRLLVIRPDCQSARFLGSEG 733

  Fly  1438 SDDGQFKFPRGVAVDDQGYIFVADSGNNRIQIFNPDGSFLKTFGSWGSGDSEFKGLEGVAIMSNG 1502
            :.:|||..|:|||||.:..|.||||.|:|||:|.|:|:||..||:.|:|..:.....|:|:..:|
Zfish   734 TGNGQFLRPQGVAVDQEDRIIVADSRNHRIQVFEPNGNFLCKFGTHGNGFGQMDRPSGIAVTPDG 798

  Fly  1503 NILVCDRENHRVQVF 1517
            .|:..|..|:|:.:|
Zfish   799 VIVAVDFGNNRILMF 813

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tnNP_001137707.1 RING-HC_NHL-1-like 3..55 CDD:438187
CC_brat-like 124..232 CDD:475168
NHL_TRIM71_like 1234..1517 CDD:271324 112/282 (40%)
NHL repeat 1258..1297 CDD:271324 17/38 (45%)
WD40 repeat 1261..1304 CDD:293791 18/42 (43%)
NHL repeat 1305..1344 CDD:271324 17/38 (45%)
WD40 repeat 1345..1377 CDD:293791 16/31 (52%)
NHL repeat 1352..1388 CDD:271324 17/35 (49%)
NHL repeat 1396..1436 CDD:271324 9/39 (23%)
WD40 repeat 1402..1439 CDD:293791 10/36 (28%)
NHL repeat 1445..1475 CDD:271324 17/29 (59%)
WD40 repeat 1446..1485 CDD:293791 22/38 (58%)
NHL repeat 1491..1517 CDD:271324 7/25 (28%)
trim71NP_001288260.1 RING-HC_TRIM71_C-VII 1..89 CDD:438251
Bbox1_TRIM71_C-VII 140..183 CDD:380870
Bbox2_TRIM71_C-VII 220..267 CDD:380854
CC_brat-like 259..389 CDD:475168
Filamin 427..522 CDD:395505 20/94 (21%)
NHL_TRIM71_like 529..813 CDD:271324 114/298 (38%)
NHL repeat 554..593 CDD:271324 17/38 (45%)
NHL repeat 601..640 CDD:271324 17/38 (45%)
NHL repeat 648..684 CDD:271324 17/35 (49%)
NHL repeat 692..732 CDD:271324 9/39 (23%)
NHL repeat 741..771 CDD:271324 17/29 (59%)
NHL repeat 787..813 CDD:271324 7/25 (28%)
Blue background indicates that the domain is not in the aligned region.

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