DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tn and trim45

DIOPT Version :9

Sequence 1:NP_001137707.1 Gene:tn / 37190 FlyBaseID:FBgn0265356 Length:1517 Species:Drosophila melanogaster
Sequence 2:NP_001011026.1 Gene:trim45 / 496435 XenbaseID:XB-GENE-997848 Length:547 Species:Xenopus tropicalis


Alignment Length:165 Identity:46/165 - (27%)
Similarity:60/165 - (36%) Gaps:48/165 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 CCVCLDRYRIPKLLPCQHSFC------MEPCM---EGLVDYVRRQVKCPECRAEHRIPYNGVQAF 65
            |..|...:..|::|||.|:.|      :||..   :|........|.||.|.:|..:|..||:  
 Frog    16 CPQCQQPFCQPRILPCLHTLCGGCLAKLEPFSALGKGHSAGTHWSVLCPVCDSEVALPAGGVE-- 78

  Fly    66 PTNVTLQRFLELHIEITGELPD-----------PTSGQIMERCGVCSEKAYLSHCAHCEKKICED 119
                      ||       |||           ..||.:...|.:|.|......|..|:..:||.
 Frog    79 ----------EL-------LPDWLAEAEVLLAQVQSGGLALPCDLCREGQAEKRCQECKVNVCEF 126

  Fly   120 CKSAHMDILRREITRFNSQIRRSLHRLQD-SLAII 153
            |..||    ||:    .......||.||| ||..|
 Frog   127 CCQAH----RRQ----KRTAAHPLHPLQDLSLGTI 153

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tnNP_001137707.1 RING 9..54 CDD:238093 15/52 (29%)
zf-B_box 94..>122 CDD:279037 8/27 (30%)
iSH2_PI3K_IA_R 131..231 CDD:304922 8/24 (33%)
NHL_TRIM71_like 1234..1517 CDD:271324
YncE 1253..>1517 CDD:225926
NHL repeat 1258..1297 CDD:271324
WD40 repeat 1261..1304 CDD:293791
NHL repeat 1305..1344 CDD:271324
WD40 repeat 1345..1377 CDD:293791
NHL repeat 1352..1388 CDD:271324
NHL repeat 1396..1436 CDD:271324
WD40 repeat 1402..1439 CDD:293791
NHL repeat 1445..1475 CDD:271324
WD40 repeat 1446..1485 CDD:293791
NHL repeat 1491..1517 CDD:271324
trim45NP_001011026.1 RING-HC_TRIM45-C-VII 14..69 CDD:319502 15/52 (29%)
Bbox1_TRIM45_C-X 102..145 CDD:380867 14/50 (28%)
zf-B_box 155..195 CDD:395518
BBC 203..>279 CDD:128778
Filamin 366..461 CDD:395505
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D489543at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.