DRSC/TRiP Functional Genomics Resources

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Protein Alignment tn and Trim9

DIOPT Version :9

Sequence 1:NP_001137707.1 Gene:tn / 37190 FlyBaseID:FBgn0265356 Length:1517 Species:Drosophila melanogaster
Sequence 2:NP_001188786.1 Gene:Trim9 / 34453 FlyBaseID:FBgn0051721 Length:740 Species:Drosophila melanogaster


Alignment Length:634 Identity:118/634 - (18%)
Similarity:188/634 - (29%) Gaps:194/634 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   516 STGGAATSTSSGGGDTASDQRVAALKNRGGEESDGSSNQAASPVRNSAASTTRAEVSVNEANTEE 580
            |.|.|.....:|.| .||......|...||    |:...||:||.|.....||.....:.|:|..
  Fly    39 SPGSALPGAVNGAG-AASAAGHNGLHGNGG----GAGGGAAAPVTNPNGPGTRHSSHSSAASTAS 98

  Fly   581 EGVASES--SDSEEDEEVEDEDE------------------------------------------ 601
            ....|||  ||.::.::|....|                                          
  Fly    99 SNTGSESVTSDQDQSDKVSIFSEADSGVVCCSNTSRPVSYAGTGLLPGVGNVVAPPGAAYCLTCP 163

  Fly   602 ----------------------EEEVD-------------EEEEQVEESVEEE------EAPREL 625
                                  |..||             |.:.:|...:.|:      :|.|||
  Fly   164 LCRKLVFFDDGGVRNLPTYRAMEAIVDRFCAREALRCQMCETDPKVASLICEQCEIRYCDACREL 228

  Fly   626 ------------LNLPEEALQPTSSEVTEEEESSSEY--------EEVTATESEEEQEEVEGRVI 670
                        |..|..|.|...|...|.||:.|:|        ..:...|...:..:|:...:
  Fly   229 THPARGPLAKHTLVKPRGAAQQRESVCGEHEETLSQYCLSCKAPACGLCIGELRHQAHDVQSINV 293

  Fly   671 EIESQDLPVINVLPPENDIAHKVEE------SPVDHISNQELMEETDKSTDESPEEE-------- 721
            ..::|          :.:::|.:::      |..:.|  |.|...:||.|:...|.|        
  Fly   294 TCKAQ----------KTELSHNLQQLSEKARSTTEFI--QRLKGMSDKVTESCMEFERLVHAQCE 346

  Fly   722 -------EEEEYTEEEIESKPPVSAQVAAVKKTQRSGSSDSSASTE----------SSASSAAAA 769
                   :..||..|.|........::.   |.|:|..:.....|.          ....|||..
  Fly   347 ALIQAIHDRREYLLEAIRMDKDTKIRIL---KDQQSNCTGKLQQTTGLIQFCIEALKETDSAAFL 408

  Fly   770 AVAA------TST------SATAAAPATSS----SNSTSQNAKAPSSSRYSTARDTTAVPEK--- 815
            .|.:      |:|      ..|.|||..|.    :...:..|:|..:..:...|......|:   
  Fly   409 QVGSMLINRVTNTDMTWHQEVTNAAPRVSPIVDLTLDDAALARAIDNLNFIQMRAVKDGDERCPA 473

  Fly   816 KPFVSRFLPQHSTASTTNGSADKKKAESSSSSEEETSSESESESEPETKAKSSATSSTTNTKSTP 880
            .|.....||  |..|..|.|........:.|..|....|.:..|..|.:.......:........
  Fly   474 APMTPTILP--SDCSAENNSVTVAWQPPNHSFVEGYVLELDDGSGGEFREVYCGKETICTVDGLH 536

  Fly   881 -NSAASSTTAASSSTTSGSYRDRLEARRA-----SRDDSSSTAAG-----RSSYATPSSSGY--- 931
             ||..::...|.:|...|.|.:.:..:.|     :.|...|..||     ..:.||.|..|:   
  Fly   537 FNSMYNARVKAFNSAGEGEYSELIGLQTAEVAWFTFDPVLSGGAGSGLIFSKNNATVSVEGWEHR 601

  Fly   932 ---GSGSGTTGGRTRAVPAPHHTSESEDRYGSGTGSSYTSRFLNKSKSS 977
               ||...:.|.........::|::::..:|........::.|.|.:.|
  Fly   602 VALGSVGFSRGVHYWEFTIDNYTADTDPAFGVARIDVARNKMLGKDEKS 650

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tnNP_001137707.1 RING 9..54 CDD:238093
zf-B_box 94..>122 CDD:279037
iSH2_PI3K_IA_R 131..231 CDD:304922
NHL_TRIM71_like 1234..1517 CDD:271324
YncE 1253..>1517 CDD:225926
NHL repeat 1258..1297 CDD:271324
WD40 repeat 1261..1304 CDD:293791
NHL repeat 1305..1344 CDD:271324
WD40 repeat 1345..1377 CDD:293791
NHL repeat 1352..1388 CDD:271324
NHL repeat 1396..1436 CDD:271324
WD40 repeat 1402..1439 CDD:293791
NHL repeat 1445..1475 CDD:271324
WD40 repeat 1446..1485 CDD:293791
NHL repeat 1491..1517 CDD:271324
Trim9NP_001188786.1 RING-HC_TRIM9_like_C-I 2..37 CDD:319490
zf-B_box 250..291 CDD:306989 8/40 (20%)
ClassIIa_HDAC_Gln-rich-N 298..420 CDD:330228 23/136 (17%)
FN3 472..564 CDD:238020 18/93 (19%)
SPRY_PRY_TRIM67_9 561..735 CDD:293947 17/90 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447036
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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