DRSC/TRiP Functional Genomics Resources

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Protein Alignment tn and ZK1240.3

DIOPT Version :10

Sequence 1:NP_001137707.1 Gene:tn / 37190 FlyBaseID:FBgn0265356 Length:1517 Species:Drosophila melanogaster
Sequence 2:NP_001364681.1 Gene:ZK1240.3 / 173588 WormBaseID:WBGene00022868 Length:304 Species:Caenorhabditis elegans


Alignment Length:309 Identity:72/309 - (23%)
Similarity:111/309 - (35%) Gaps:89/309 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 CCVC------LDRYRIPKLLPCQHSFCMEPCMEGLVDYVRRQVKCPECRAEHRIPYNGVQAFPTN 68
            |.:|      :|:...||:|.|.||.| :.|...|:  ....:.||.||...:|....|:....|
 Worm     6 CEICCKEYSNIDQNHSPKILKCGHSIC-QICAAKLI--TNSCIYCPFCRETTKIRDGKVENLKKN 67

  Fly    69 VTLQRFLELHIEITGELPDPTSGQIMERC--------------GVCSEKAYLSHCAHCEK----- 114
            ..|.:.:|:....|.:  ..|.|....:|              ..||.|.... |..||:     
 Worm    68 FGLMKAIEIMKNSTTK--QDTPGFSPTKCSAHPYNLAEFVCMGNTCSAKDKFM-CRTCEEFGIHK 129

  Fly   115 ------------KICE--DCKSAHMDILRR---------------EITRFNSQIR------RSLH 144
                        |:.|  :|:...|::..|               .||.||.::.      :.||
 Worm   130 GHARGLLISESAKLREILECRFEKMELNNRIFEEQLKEIRKAGITNITLFNQKVGKVNLHFKKLH 194

  Fly   145 RL--QDSLAIIEKNTMS----------LQTNAISVTEEIDEIYQRITKAIKDRSDQLKGEIDRYL 197
            ||  ....|||||..:|          .:...:...||:.:..:|:...|.....||      ::
 Worm   195 RLLSDQEEAIIEKLELSSSKTYELNLEKENKLLQSQEELAKKMERMKTRINLNDTQL------FI 253

  Fly   198 A-VELRNLTTLKENLDLEITNITSNCDTVDKYMNETVEWDDCELMDTKE 245
            | ||:|..|...||   |:.:.....|.|:..: .|::..||.|..|.|
 Worm   254 AGVEMRGPTWYYEN---ELPDCPPATDDVEVRL-PTIKIKDCLLELTNE 298

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tnNP_001137707.1 RING-HC_NHL-1-like 3..55 CDD:438187 16/50 (32%)
CC_brat-like 124..232 CDD:475168 32/141 (23%)
NHL_TRIM71_like 1234..1517 CDD:271324
NHL repeat 1258..1297 CDD:271324
WD40 repeat 1261..1304 CDD:293791
NHL repeat 1305..1344 CDD:271324
WD40 repeat 1345..1377 CDD:293791
NHL repeat 1352..1388 CDD:271324
NHL repeat 1396..1436 CDD:271324
WD40 repeat 1402..1439 CDD:293791
NHL repeat 1445..1475 CDD:271324
WD40 repeat 1446..1485 CDD:293791
NHL repeat 1491..1517 CDD:271324
ZK1240.3NP_001364681.1 RING_Ubox 4..51 CDD:473075 14/47 (30%)
Bbox_SF 91..132 CDD:469587 7/41 (17%)
Blue background indicates that the domain is not in the aligned region.

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