DRSC/TRiP Functional Genomics Resources

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Protein Alignment tn and TRIM3

DIOPT Version :10

Sequence 1:NP_001137707.1 Gene:tn / 37190 FlyBaseID:FBgn0265356 Length:1517 Species:Drosophila melanogaster
Sequence 2:XP_047282213.1 Gene:TRIM3 / 10612 HGNCID:10064 Length:827 Species:Homo sapiens


Alignment Length:448 Identity:143/448 - (31%)
Similarity:211/448 - (47%) Gaps:58/448 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly  1099 LGGSSTTDSKDGEALSSWARYLKNKYGNKSS-----KDSAG---SSGSA--RDTHAGSSTSSSAA 1153
            ||...||.:...|.:::.....:...|..:|     ||..|   .:|||  |....|...:....
Human   395 LGALLTTSATAHETVATGEGLRQALVGQPASLTVTTKDKDGRLVRTGSAELRAEITGPDGTRLPV 459

  Fly  1154 ASSSHAHG-----YGSGTSGSSGRSTASDVSRRLSLGLPLR---------QANELASSDDDGSKN 1204
            ....|.:|     |.:.|.|....|.       |..|.|:|         :..:|..|.|| .|.
Human   460 PVVDHKNGTYELVYTARTEGELLLSV-------LLYGQPVRGSPFRVRALRPGDLPPSPDD-VKR 516

  Fly  1205 GLGSPTSPTVAAAVAAAGITGAAGTIPKQVYLR--KRQQ-------LFQLGGRGSEPGSFTWPRG 1260
            .:.||..|       .:.:...|...|..:|..  ||:.       :|::|.||.|.|.||..:|
Human   517 RVKSPGGP-------GSHVRQKAVRRPSSMYSTGGKRKDNPIEDELVFRVGSRGREKGEFTNLQG 574

  Fly  1261 LAVGPDNSIVVADSSNHRVQVFDSNGIFVKEFGEYGNGEGEFDCLAGVAVNRIGQYIIADRYNHR 1325
            ::......||||||:|..:|||.:.|.|...||..|...|:.....||||:..|..|:||..|..
Human   575 VSAASSGRIVVADSNNQCIQVFSNEGQFKFRFGVRGRSPGQLQRPTGVAVDTNGDIIVADYDNRW 639

  Fly  1326 IQVLDPQGRFLRAFGSQGTADGKFNYPWGVTTDALGFIYVCDKENHRVQVFQSDGSFVGKFGSCG 1390
            :.:..|:|:|....|:     |:...|.||..|..|.|.|.|.::..|..||.:|..||:||..|
Human   640 VSIFSPEGKFKTKIGA-----GRLMGPKGVAVDRNGHIIVVDNKSCCVFTFQPNGKLVGRFGGRG 699

  Fly  1391 RGEGQLEHPHYIAVSNTNRVIVSDSNNHRIQIFDVNGKVLSTVGGEGSDDGQFKFPRGVAVDDQG 1455
            ..:.....||::||:|.|.::|:|.:||.::::..:|:.|...|..|..:|||..|.|||||..|
Human   700 ATDRHFAGPHFVAVNNKNEIVVTDFHNHSVKVYSADGEFLFKFGSHGEGNGQFNAPTGVAVDSNG 764

  Fly  1456 YIFVADSGNNRIQIFNPDGSFLKTFGSWGSGDSE-FKGLEGVAIMSNGNILVCDRENH 1512
            .|.|||.||:|||:|:..||||    |:.:..:| ..|.:|:|:.|:|:::|.|..||
Human   765 NIIVADWGNSRIQVFDSSGSFL----SYINTSAEPLYGPQGLALTSDGHVVVADAGNH 818

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tnNP_001137707.1 RING-HC_NHL-1-like 3..55 CDD:438187
CC_brat-like 124..232 CDD:475168
NHL_TRIM71_like 1234..1517 CDD:271324 108/289 (37%)
NHL repeat 1258..1297 CDD:271324 15/38 (39%)
WD40 repeat 1261..1304 CDD:293791 16/42 (38%)
NHL repeat 1305..1344 CDD:271324 13/38 (34%)
WD40 repeat 1345..1377 CDD:293791 10/31 (32%)
NHL repeat 1352..1388 CDD:271324 15/35 (43%)
NHL repeat 1396..1436 CDD:271324 13/39 (33%)
WD40 repeat 1402..1439 CDD:293791 12/36 (33%)
NHL repeat 1445..1475 CDD:271324 17/29 (59%)
WD40 repeat 1446..1485 CDD:293791 22/38 (58%)
NHL repeat 1491..1517 CDD:271324 9/22 (41%)
TRIM3XP_047282213.1 RING-HC_TRIM3 99..146 CDD:438424
Bbox2_TRIM3_C-VII 190..236 CDD:380883
BBC 241..367 CDD:128778
IG_FLMN 405..502 CDD:214720 21/103 (20%)
NHL_TRIM2_like 554..827 CDD:271330 105/274 (38%)
NHL repeat 572..611 CDD:271330 15/38 (39%)
NHL repeat 619..658 CDD:271330 14/43 (33%)
NHL repeat 661..698 CDD:271330 16/36 (44%)
NHL repeat 705..746 CDD:271330 13/40 (33%)
NHL repeat 752..794 CDD:271330 23/45 (51%)
NHL repeat 797..823 CDD:271330 9/22 (41%)
Blue background indicates that the domain is not in the aligned region.

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