DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tn and trim3

DIOPT Version :9

Sequence 1:NP_001137707.1 Gene:tn / 37190 FlyBaseID:FBgn0265356 Length:1517 Species:Drosophila melanogaster
Sequence 2:XP_031753313.1 Gene:trim3 / 100497041 XenbaseID:XB-GENE-5826034 Length:790 Species:Xenopus tropicalis


Alignment Length:793 Identity:201/793 - (25%)
Similarity:306/793 - (38%) Gaps:175/793 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   798 PSSSRYS--TARDTTAVPEKKPFVSRFLPQHSTASTTNGSADKKKAESSSSSEEETSSESESESE 860
            |.|...|  ..|.|:.:|||.  ||..  |::...|......::..||....:....||.:....
 Frog    96 PQSLTLSCPVCRQTSILPEKG--VSAL--QNNFFITNLMEVLQRSPESGRQEQSVLPSEGQEAGT 156

  Fly   861 PETKAKSSATSSTTNTKSTPNSAASS--------TTAASSSTTSGSY--------RDRLEARRAS 909
            |               .|.||....:        .||.....|.|.:        ||.:|..:||
 Frog   157 P---------------LSCPNHQGKTMEYYCGPCETAMCVECTEGEHREHCTVPLRDVVEQHKAS 206

  Fly   910 RDDSSSTAAGRSSYATPSSSGYGSGSGTTGGRTRAVPAPHHTSESEDRYGSGTGSSY--TSRFLN 972
            ..:...:...|....|       |........:|.:      ||.::...:...|::  ..:.|.
 Frog   207 LRNQLESIRSRIPQLT-------SAIDLVSDISRQL------SERKNSAVNEICSAFEELEKALQ 258

  Fly   973 KSKSSAI------------VTQPSLST---------PTASFDEDATGTGDDSDSRYGTGRSRYLA 1016
            :.||:.:            |.|..||:         .:..|.|.|.|.|.:::.        .|.
 Frog   259 QRKSALLQDLEAICVGKQKVLQSQLSSLRQGLDNMESSVRFTEQALGHGSETEV--------LLV 315

  Fly  1017 MKERRTRLARSRSSHQFGNDDEDLDEPVSPTTVSPSAYLASRCAYSGYGSSDLSRS-RSSHALKS 1080
            .|:...||          |:....|.|:.|   ..:..|..|....|     |.|| ::..||.:
 Frog   316 RKQMSERL----------NELAARDFPLHP---QQNPQLEFRVETEG-----LRRSLQNLGALLT 362

  Fly  1081 RDNSPITDRGAGSSRSSGLGGSS-----TTDSKDGEALSSWARYLKNKYGNKSSKDSAGSSGSAR 1140
            .:.........|......|.|..     ||...|||.:.|....||.:.   :..|.....|...
 Frog   363 TNAVAYASVATGEGLRQALVGQQTSVTVTTKDMDGELVRSGNATLKAQI---TGPDGGAQEGEVT 424

  Fly  1141 DTHAGS-STSSSAAASSSHAHG---YGSGTSGSSGRSTA----------SDVSRRLSLGLPLRQA 1191
            |...|: ....:......|...   ||....||..|..|          .||.||:.        
 Frog   425 DNKNGTYEVLYTLRVEGEHLLSLRLYGQPLRGSPYRVRAIKPGDVPPSPEDVKRRVK-------- 481

  Fly  1192 NELASSDDDGSKNGLGSPTSPTVAAAVAAAGITGAAGTIPKQVYLRKR--------QQLFQLGGR 1248
                               ||      :...|...|...|..:|...:        :.:.::|.|
 Frog   482 -------------------SP------SGGHIRQKAVRRPSSMYSTNKKKENPIEDEMILRVGSR 521

  Fly  1249 GSEPGSFTWPRGLAVGPDNSIVVADSSNHRVQVFDSNGIFVKEFGEYGNGEGEFDCLAGVAVNRI 1313
            |.:.|.|:..:|::...:|.||||||:|..:|||.::|.|...||..|...|:.....||||:..
 Frog   522 GRDKGEFSNLQGISASCNNRIVVADSNNQCIQVFTNDGQFKLRFGVRGRSPGQLQRPTGVAVDMN 586

  Fly  1314 GQYIIADRYNHRIQVLDPQGRFLRAFGSQGTADGKFNYPWGVTTDALGFIYVCDKENHRVQVFQS 1378
            |..|:||..|..:.:..|:|:|....|.     |:...|.||..|..|.:.|.|.::..:.:|||
 Frog   587 GDIIVADYDNRWVSIFSPEGKFKNKIGV-----GRLMGPKGVAVDRNGHLIVVDNKSCCIFIFQS 646

  Fly  1379 DGSFVGKFGSCGRGE----GQLEHPHYIAVSNTNRVIVSDSNNHRIQIFDVNGKVLSTVGGEGSD 1439
            :|..||:||:.|.|:    |.|:.||::||:|.|.::|:|.:||.::::..:|:.|...|..|..
 Frog   647 NGKLVGRFGARGPGDKQQPGALDGPHFVAVNNKNEIVVTDFHNHSVKVYSADGEFLYKFGSHGEG 711

  Fly  1440 DGQFKFPRGVAVDDQGYIFVADSGNNRIQIFNPDGSFLKTFGSWGSGDSEFKGLEGVAIMSNGNI 1504
            :|||..|.|||||..|.|.|||.||:|||:|:..||||....:.|   ....|.:|:|:.|.|::
 Frog   712 NGQFNAPTGVAVDSNGNIIVADWGNSRIQVFDSSGSFLSYINTMG---DPLYGPQGLALTSEGHV 773

  Fly  1505 LVCDRENHRVQVF 1517
            :|.|..||..:|:
 Frog   774 VVADSGNHCFKVY 786

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tnNP_001137707.1 RING 9..54 CDD:238093
zf-B_box 94..>122 CDD:279037
iSH2_PI3K_IA_R 131..231 CDD:304922
NHL_TRIM71_like 1234..1517 CDD:271324 105/294 (36%)
YncE 1253..>1517 CDD:225926 101/267 (38%)
NHL repeat 1258..1297 CDD:271324 16/38 (42%)
WD40 repeat 1261..1304 CDD:293791 17/42 (40%)
NHL repeat 1305..1344 CDD:271324 13/38 (34%)
WD40 repeat 1345..1377 CDD:293791 8/31 (26%)
NHL repeat 1352..1388 CDD:271324 14/35 (40%)
NHL repeat 1396..1436 CDD:271324 14/39 (36%)
WD40 repeat 1402..1439 CDD:293791 12/36 (33%)
NHL repeat 1445..1475 CDD:271324 17/29 (59%)
WD40 repeat 1446..1485 CDD:293791 21/38 (55%)
NHL repeat 1491..1517 CDD:271324 9/25 (36%)
trim3XP_031753313.1 RAD18 54..>150 CDD:227719 14/57 (25%)
RING_Ubox 63..107 CDD:418438 3/10 (30%)
Bbox2_TRIM3_C-VII 154..198 CDD:380883 8/58 (14%)
BBC 203..328 CDD:128778 26/155 (17%)
IG_FLMN 369..463 CDD:214720 21/96 (22%)
NHL_TRIM2_like 513..790 CDD:271330 105/282 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 279 1.000 Inparanoid score I2846
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D133242at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm48592
Panther 1 1.100 - - O PTHR24104
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2677
SonicParanoid 1 1.000 - - X1654
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.100

Return to query results.
Submit another query.