DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18605 and l(3)psg2

DIOPT Version :10

Sequence 1:NP_001188974.1 Gene:CG18605 / 37189 FlyBaseID:FBgn0034411 Length:415 Species:Drosophila melanogaster
Sequence 2:NP_647974.1 Gene:l(3)psg2 / 38630 FlyBaseID:FBgn0035617 Length:1929 Species:Drosophila melanogaster


Alignment Length:245 Identity:50/245 - (20%)
Similarity:88/245 - (35%) Gaps:34/245 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   188 MMERYGGAPFLMKMDG---QLVTARIIPSSQANAPNQGQVNQQTQSQAQAQAQAQAQVQAQAQAQ 249
            |.:..||:...|:...   ||.....:..:..|:...|:|  .|.......:.|..:..::....
  Fly     1 MSQAAGGSAVGMEQPATGKQLKPPEDLQDNDTNSLEPGEV--VTPPHYHPSSPAVKKHLSKELMI 63

  Fly   250 AQTQAQTQAQALAQAQAQAQVQAQPQAQVQQAAAQPAQLLLPQLTQAVIQTQQRAVHQPQQSGQQ 314
            ::|..:.....:.||:.:......|.||.:.  |..::.|..:...:  ....:.|...|::.::
  Fly    64 SKTLRKLPVSVVEQARKENGSGGTPNAQAED--ADDSEGLYSESDSS--GEDLKNVEDVQKARKE 124

  Fly   315 SGPQHASSTAALATPLEDLELG----------FAIERSMFVGASNADQGGDFILPYGQVFRFAN- 368
            ...:.|::|...|.|...|.:.          |...|..|:...|  :||    |.|....|.. 
  Fly   125 KQEEAAAATLPQAPPTPFLGINPLRFHMRAPCFEFPRMGFMPRMN--RGG----PRGMRPTFFGR 183

  Fly   369 ---TNRAARPSNGNGSGSGVMNPPPAPPVPNN--PRNASAHQGRRRRTQN 413
               .||...|..|   |.....|||....|.|  |...:::.||.:|.|:
  Fly   184 PPAANRMGAPMMG---GLPTQGPPPGAYAPQNPPPTGINSNSGRCKRLQS 230

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18605NP_001188974.1 None
l(3)psg2NP_647974.1 PTZ00121 <308..>573 CDD:173412
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.