DRSC/TRiP Functional Genomics Resources

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Protein Alignment Topors and pex10

DIOPT Version :9

Sequence 1:NP_001261083.1 Gene:Topors / 37188 FlyBaseID:FBgn0267351 Length:1038 Species:Drosophila melanogaster
Sequence 2:XP_002936605.1 Gene:pex10 / 100487506 XenbaseID:XB-GENE-954175 Length:324 Species:Xenopus tropicalis


Alignment Length:58 Identity:22/58 - (37%)
Similarity:30/58 - (51%) Gaps:9/58 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 RNSPP--------PNCAICLSRCRRKCFTDSCMHQFCFKCLCEWSKIKPECPLCKQPF 144
            :.:||        ..|.:|| ..||.|....|.|.||::|:.||...|.|||||::.|
 Frog   256 QRAPPHEKSYKRRAKCTLCL-EVRRHCTATPCGHLFCWECITEWCNTKTECPLCREKF 312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ToporsNP_001261083.1 RING 102..144 CDD:238093 19/41 (46%)
pex10XP_002936605.1 Pex2_Pex12 16..215 CDD:368100
RING-HC_PEX10 270..309 CDD:319441 18/39 (46%)
RING-HC finger (C3HC4-type) 271..308 CDD:319441 17/37 (46%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23350
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

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