DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment MetRS and Mars1

DIOPT Version :10

Sequence 1:NP_611382.1 Gene:MetRS / 37177 FlyBaseID:FBgn0034401 Length:1022 Species:Drosophila melanogaster
Sequence 2:XP_006241513.1 Gene:Mars1 / 299851 RGDID:1305321 Length:910 Species:Rattus norvegicus


Alignment Length:961 Identity:450/961 - (46%)
Similarity:594/961 - (61%) Gaps:96/961 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MIIYTNDGNPLGLQLLMLAKFAKQPVQVQLVNLNDAKYKDLLV-------LPTLELDNGLRLFSP 58
            |.::.::|:|..|.:|..|..|:...::.:..:..   ::.:|       :|.|:||:|..|||.
  Rat     1 MRLFVSEGSPGSLPVLAAAARARGRAELLISTVGP---EECVVPFLTRPKVPVLQLDSGNYLFSA 62

  Fly    59 AAIAKYLFVGKGQQRD----EWLEWSATLLAPALA---HHMAVGHKADANALPVLNALVKKLDDK 116
            :||.:|.|:..|.::|    :||||.||.|.|.|:   :.:.|..|...:.|..|..::..:|..
  Rat    63 SAICRYFFLLCGWEQDDLTNQWLEWEATELQPVLSAALYCLVVQGKKGEDVLGPLRRVLTHIDHS 127

  Fly   117 L--KATPYLAGDKPSAADIAIWSLLAPDGTLKG----AQNVDNLRDWYGRVKALPEVQEVLAEQP 175
            |  :..|:||||..|.|||.:|..|.|  .|:.    .:.:..|:.|:..:......|.. ||..
  Rat   128 LSRQNCPFLAGDTESLADIVLWGALYP--LLQDPAYLPEELGALQSWFQTLSTQEPCQRA-AETV 189

  Fly   176 LKDLSFNALQQSNRYGGLHHVPLKRLSLADASKLLVDTTPTVADTVTNEEISAAKAAF---TYTA 237
            ||.....||:..     |...|..:....:...:..:.......|::.|:|.||.||:   ....
  Rat   190 LKQQGVLALRPY-----LQKQPQPQPLPPEGRAVSNEPEEEELATLSEEDIIAAVAAWEKGLENL 249

  Fly   238 PKEIKEERTVLPKPGERNVLITSALPYVNNVPHLGNIIGCVLSADIYARYSRSAGYNTLLICGTD 302
            |....::..|||.||||||||||||||||||||||||||||||||::|||||...:|||.:||||
  Rat   250 PPLQPQQHPVLPVPGERNVLITSALPYVNNVPHLGNIIGCVLSADVFARYSRLRQWNTLYLCGTD 314

  Fly   303 EYGTATENKALAENLTPREICDKYFELHNAIYRWFGIGFDYFGRTTTQEQTDIVQEAFKDVLKAG 367
            |||||||.||:.|.|||:||||||..:|..|||||.|.||.||||||..||.|.|:.|:.:|..|
  Rat   315 EYGTATETKAMEEGLTPQEICDKYHAIHVDIYRWFNISFDTFGRTTTPLQTKITQDIFQRLLTRG 379

  Fly   368 YIITESVEQLLCQKCDRFLADRFVEGTCPHPGCGYEDARGDQCDKCGKLVNATELIRPRCKVCNS 432
            :::.::||||.|::|.||||||||||.||.  ||||:||||||||||||:||.||.||:||||.|
  Rat   380 FVLQDTVEQLRCEQCARFLADRFVEGVCPF--CGYEEARGDQCDKCGKLINAIELKRPQCKVCRS 442

  Fly   433 APVLRSSDQLFIDLPKAEPQLKEWVDKSEGG--WTHNAKVITRAWLKEGLKPRCITRDLKWGIPV 495
            .||::||..||:||||.|.:|::|:.|:..|  ||.||:.|.|:||::||||||||||||||.||
  Rat   443 HPVVKSSKHLFLDLPKLEKRLEDWLGKTMPGSDWTPNARFIIRSWLRDGLKPRCITRDLKWGTPV 507

  Fly   496 PHEGFEKKVFYVWFDAPFGYVSMTKRYTKEYQQWWQPAKGTDVELFQFMAKDNVPFHSVVWPSVL 560
            |.||||.|||||||||..||:|:|..||.::::||:..:  .|:|:|||||||||||.:|:|...
  Rat   508 PLEGFEDKVFYVWFDATIGYLSITANYTDQWERWWKNPE--QVDLYQFMAKDNVPFHGLVFPCSA 570

  Fly   561 LAINKGHTLVSHIMATEYLNYEDGKFSKSRGIGVFGNDAQETGIPADVWRFYLASARPEGQDSSF 625
            |.....:|||.:::||||||||||||||||||||||:.||:||||||:|||||...|||||||:|
  Rat   571 LGAEDNYTLVKNLIATEYLNYEDGKFSKSRGIGVFGDMAQDTGIPADIWRFYLLYIRPEGQDSAF 635

  Fly   626 SWNDLAARNNSELLNNLGNFVNRALVFCEKNFSSTVPGVITTQDELVLLALINRELRGYINSMEK 690
            ||.||..:||||||||||||:|||.:|..|.|...||.::.|.|:..|:|.::.||:.|...:||
  Rat   636 SWTDLLIKNNSELLNNLGNFINRAGMFVSKFFGGCVPEMVLTHDDRRLVAHVSWELQRYHQLLEK 700

  Fly   691 AKLRDGVRHLLAISRHGNGYMQSQQPWVLLKGTDDQKTRASTIIGLCVNIACLLANLLFPYMPTT 755
            .::||.:|.:|.||||||.|:|..:||..:||.:..:.||.|:.|:.||||.||:.:|.|||||.
  Rat   701 VRIRDALRSILTISRHGNQYIQVNEPWKRIKGDEMDRQRAGTVTGMAVNIAALLSVMLQPYMPTV 765

  Fly   756 ARTLFGQLNAKQTPLNAEKPLVT---LLLPAGHQIGKPAPLFAKLEQSFIDELKGKYGGAQATND 817
            :.|:..||   |.|..|.:.|.|   ..|||||:||..:|||.|||...|:.|:.::||.|    
  Rat   766 SSTIQTQL---QLPEAACRILATSFICTLPAGHRIGTVSPLFQKLENDQIENLRQRFGGGQ---- 823

  Fly   818 AAHSQISAADLEKAVQAQADKVRELKASTKDKAIWQPEVTKLLDLKKQLEEAKKKTATAAAPAAT 882
                      ||::::.||      |.|.|                           .|...|.|
  Rat   824 ----------LEESLELQA------KGSPK---------------------------PAVVEAVT 845

  Fly   883 PAPSNGSQSVQDLEKAIQEQGDKVRKLKGSTKDKTVWQPEVNILLDLKKQL 933
            .|   |||.:|.|...:.:||:.||:||....||.....||..||||||||
  Rat   846 TA---GSQDIQVLVDEVTKQGNIVRELKAQKADKNQVAAEVAKLLDLKKQL 893

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MetRSNP_611382.1 GST_N_5 1..70 CDD:436537 20/75 (27%)
GST_C_family 63..164 CDD:470672 34/113 (30%)
PLN02610 248..>850 CDD:215329 353/606 (58%)
MetRS_RNA 895..938 CDD:238475 19/39 (49%)
MetRS_RNA 966..1009 CDD:238475
Mars1XP_006241513.1 GST_N_5 1..74 CDD:436537 20/75 (27%)
GST_C_MetRS_N 77..179 CDD:198340 31/103 (30%)
PLN02610 258..>839 CDD:215329 354/634 (56%)
MetRS_RNA 855..899 CDD:238475 19/39 (49%)
Blue background indicates that the domain is not in the aligned region.

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