DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mctp and syn1

DIOPT Version :9

Sequence 1:NP_001261078.1 Gene:Mctp / 37165 FlyBaseID:FBgn0034389 Length:982 Species:Drosophila melanogaster
Sequence 2:NP_593974.1 Gene:syn1 / 2542267 PomBaseID:SPAPYUK71.03c Length:1225 Species:Schizosaccharomyces pombe


Alignment Length:629 Identity:137/629 - (21%)
Similarity:215/629 - (34%) Gaps:196/629 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   145 SSEGSSVTHSPRHRSTTIGGSPLAREFRATAKMAQVIQRFGGSMEGRIDEHPENGSAGCSPPELS 209
            |.|.|..|..|..::.|:|......|                      .||| .|:|..|..:|.
pombe   617 SWEESFGTLLPEGKNATLGVQIFTEE----------------------SEHP-FGTANVSLQDLF 658

  Fly   210 TQQQLEALQANELRRKREAQLRQFVFFQ--------------------LRVHLKSGSDLVAMDKN 254
            ...:...|.. .|:.....::|..|.::                    :|:||:|.::|.:....
pombe   659 AATKTGLLWF-PLQHAPSGRVRMSVMWKPAQLNNDSISSMALATPIGAIRIHLRSANNLHSKIPG 722

  Fly   255 GLSDPYVKFKVGGRLLHKSRTIHRDLNPVWDEVFIVPIEDPFQPIIVKVFDYDWGLQDDFMGSAK 319
            ...|.|.:.........::..|..::||.|||....|:........::|.:|:...:|..:|...
pombe   723 KKCDSYARIMSHNTKQFRTVVIASNVNPFWDEYMYAPVITKHDIFFLQVMNYNSSGEDKLIGQTP 787

  Fly   320 LDLT----QLELGKAEDIH----LQLCDSSGNGGSGLGEIL------------------------ 352
            ::::    |.|.|...:.|    |.:..||..|..|...|.                        
pombe   788 INISNFINQGENGALMEYHDPRELTVPLSSTRGIKGNATITFKCDFFPSAVTTSLSPDVTPAPKA 852

  Fly   353 --------INLTLWPRSQED----KEMHFQRNSKLAESSKRLK-SQIWS---------------- 388
                    :|:.:.|.||:.    ......|.|...::||..| |::..                
pombe   853 SSTVATDKVNIEVLPESQKTPTAVDNTSTSRGSTSVKTSKPKKISELLMPSEAVNAALDFESGFM 917

  Fly   389 --SVVTILLVK-AKDLPLAED--------GSKLNDTHFKFRLGNEKYKSKSSWTERWLE--QFDL 440
              .:::..:.| |::|.:..|        .|.||.|      |........:...|.||  |...
pombe   918 GFDIISYKIAKPAQELAIFLDDLPHHIFLSSALNVT------GGATLHEYGNTFIRQLEYSQCTF 976

  Fly   441 HLFDEDQNLEIALWNRNTLYGKAIIDLSVFQRENTHGIWKPLEDCPGEVHLMLTISGTTALETIS 505
            .|.|.|:.:     ...|:..:.:|         :.|..||||              ....:..|
pombe   977 KLLDGDKEV-----GSKTMLSRDLI---------SKGATKPLE--------------IAFPDGAS 1013

  Fly   506 DLKAFKEDPREAQLLR-ERYKFLRCLQNLRDVGHLTVKVFGATGLAAADIGGKSDPFCVLEL-GN 568
            .|.||:..|...:|.. |.|:         ::|.:||.|..||.|.|||..||||||.|.|| |.
pombe  1014 ILVAFRLTPVPVKLEEVEMYE---------NMGEMTVDVIKATDLPAADSNGKSDPFVVFELQGE 1069

  Fly   569 ARLQTQTEYKTLTPNWNKIFTFNV--KDITQVLEITVFDEDRDHRVEFLGKLV------------ 619
            ...:|:|..:||.|.:|:.|...:  |.....: ..|||.|..::.:.||..|            
pombe  1070 EVYRTKTHKRTLNPTFNESFEVELPCKQTCNFV-ANVFDWDFGNKDDHLGSCVIDCKLLQQQQQT 1133

  Fly   620 ---IPL--------LRIKSGVKRWYTLKDKNLCVRAKGNSPQIQ 652
               |||        |||....|  :.|:.|    || |||..::
pombe  1134 NYEIPLDSKQGVLYLRITLSPK--WVLRSK----RA-GNSSLVE 1170

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MctpNP_001261078.1 C2A_MCTP_PRT 237..357 CDD:176007 29/179 (16%)
C2B_MCTP_PRT 390..497 CDD:176022 23/117 (20%)
C2C_MCTP_PRT 537..658 CDD:176023 49/142 (35%)
PRT_C <789..893 CDD:285560
syn1NP_593974.1 COG5038 1..1225 CDD:227371 137/629 (22%)
C2A_Tricalbin-like 434..555 CDD:176009
C2B_Tricalbin-like 581..686 CDD:176017 19/92 (21%)
C2C_Tricalbin-like 704..823 CDD:176010 26/118 (22%)
C2D_Tricalbin-like 1039..1153 CDD:176005 40/114 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 62 1.000 Domainoid score I2944
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2311
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.940

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