DRSC/TRiP Functional Genomics Resources

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Protein Alignment List and slc6a17

DIOPT Version :9

Sequence 1:NP_611364.2 Gene:List / 37157 FlyBaseID:FBgn0034381 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_001243653.1 Gene:slc6a17 / 798635 ZFINID:ZDB-GENE-030131-8187 Length:730 Species:Danio rerio


Alignment Length:590 Identity:175/590 - (29%)
Similarity:291/590 - (49%) Gaps:99/590 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 KPAEQWGNGLEFLFSCISLSVGLGNIWRFPYIAFQNGGGTFVIPYLIALLVIGRPVYYLEISLGQ 80
            :||  |.:.|:::.:.:..||||||:|||||:..:||||.:::||.|.|::||.|:::||:::||
Zfish    63 RPA--WNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLVPYFILLILIGIPLFFLELAVGQ 125

  Fly    81 FTGRGVVKAFD-MAPLLKGVALGQVLATAASITYYSSIMALTLRFWLASFGSELPWSRCWESWGT 144
            ...||.:..:: :.|.|.|:....::.......||:.|:..::.::..||...||||        
Zfish   126 RIRRGSIGVWNYVCPRLGGIGASSLMVCGFVGLYYNVIIGWSIFYFFQSFQYPLPWS-------- 182

  Fly   145 DC---HDGN---AQNSSGKMSPAQLYFEREILHEVPNIDNGLSLPNWQLVACLAIAWLVIGGVLI 203
            ||   .:|:   .:....|.|....::.||.|:....|.:...| ||::...|..||:::...:|
Zfish   183 DCPIRKNGSQAIVEPECEKSSATTYFWYRETLNITSTIADSGGL-NWRMTLSLLAAWIIVCLAVI 246

  Fly   204 RGIKSSGKAAYFLGVFPYVVLLILLLRAVTLPGAIDGIIYFFKPQWRELLNPLVWYAAVTQVFFS 268
            :||:||||..||..:||||||...|:|.:.|.||:|||.:.|.|:...:|.|.||..|.|||||:
Zfish   247 KGIQSSGKVMYFSSLFPYVVLFCFLVRGLFLKGAVDGIAHMFTPKLEIMLEPQVWREAATQVFFA 311

  Fly   269 LAICFGTLITYASYNNFNRNVYNDIVIITTMDSCSSIIAGCITFGILG---NLARE--------- 321
            |.:.||.:|.::|||..:.|.:.|.|:::.::..:||:|..:.|.:||   |:..|         
Zfish   312 LGLGFGGVIAFSSYNKRDNNCHFDAVLVSVINFLTSILATLVVFAVLGFKANIMNEKCVVENAEK 376

  Fly   322 --------------------------TGNPDIGSVVK-------------------------GGA 335
                                      :...::..|:|                         .|.
Zfish   377 ILGYLNSNVLSHDLIPPHVNFSHLTTSDYAEMYGVIKIVKEDSFAQLGLEQCLLEDELNKAVQGT 441

  Fly   336 GLAFISYPEAIAKFEYVPQMFAVLFFLMLFVLGIGSTVGMGSCILRVIRDQFGLRSPPIWKLASG 400
            |||||::.||:..|...| .::|:||.||..||:||.:|..:.|...|.|.|.:|..   .|..|
Zfish   442 GLAFIAFTEAMTHFPASP-FWSVMFFFMLINLGLGSMIGTMTGITTPILDTFKIRKE---YLTVG 502

  Fly   401 LTVLGFSVSIVYMTPGGQFILNLVDFYGVSFTALILAIGELVAVAWIYGVNRFCEDIKFMMGIET 465
            ..::.|...::::...|.:.:.:.|.|.......|:.|.|.|:||||||..||.:|::.|:|...
Zfish   503 CCIVAFLCGLLFVQRSGNYFVTMFDDYSAGLPLTIVVILENVSVAWIYGTKRFMQDLEDMLGFRP 567

  Fly   466 GWYWRLCWRFITPGLMTAVLIYMLLDM--SALEYKG----------VGYPTLAHVFGCF-LATLG 517
            ...:...|::::|..:..::...:::|  |.|.|..          ..||..|.|. || |..:.
Zfish   568 YSVYFYLWKYVSPVCLIILISASVVEMAISPLGYNAWVQDLAMERFQSYPPWAIVM-CFALIIVA 631

  Fly   518 LIQLP 522
            ::.||
Zfish   632 MLPLP 636

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ListNP_611364.2 SLC6sbd 19..489 CDD:271359 160/539 (30%)
slc6a17NP_001243653.1 SLC5-6-like_sbd 63..651 CDD:294310 175/590 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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