DRSC/TRiP Functional Genomics Resources

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Protein Alignment List and slc6a13

DIOPT Version :9

Sequence 1:NP_611364.2 Gene:List / 37157 FlyBaseID:FBgn0034381 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_001072913.1 Gene:slc6a13 / 780375 XenbaseID:XB-GENE-5947897 Length:601 Species:Xenopus tropicalis


Alignment Length:549 Identity:199/549 - (36%)
Similarity:301/549 - (54%) Gaps:32/549 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 QWGNGLEFLFSCISLSVGLGNIWRFPYIAFQNGGGTFVIPYLIALLVIGRPVYYLEISLGQFTGR 84
            ||.|.:||:.|.....:||||:|||||:.::||||.|.|||||.|...|.||::||.:|||:|.:
 Frog    39 QWNNKVEFVLSVAGEIIGLGNVWRFPYLCYKNGGGAFFIPYLIFLFTCGIPVFFLETALGQYTSQ 103

  Fly    85 GVVKAF-DMAPLLKGVALGQVLATAASITYYSSIMALTLRFWLASFGSELPWSRCWESWGT---- 144
            |.|.|: .:.||.:|:.....:.......||..::|..|.:...||.|||||:.|..||.|    
 Frog   104 GGVTAWRKICPLFEGIGYSSQVIVMLLNCYYIVVLAWALFYLFNSFTSELPWASCGHSWNTENCL 168

  Fly   145 DCHDGNAQNS---SGKMSPAQLYFEREILHEVPNIDN--GLSLPNWQLVACLAIAWLVIGGVLIR 204
            |.:.||:.::   :|..|..: ::||.:|.....|||  ||   :|:|..||.:||::....:.:
 Frog   169 DFYKGNSTHNVTLNGTSSVIE-FWERRVLRISDGIDNIGGL---HWELALCLLLAWIICYFCIWK 229

  Fly   205 GIKSSGKAAYFLGVFPYVVLLILLLRAVTLPGAIDGIIYFFKPQWRELLNPLVWYAAVTQVFFSL 269
            |:||:||..||...|||::|::||:|.|:||||:.||.::..|....|.:|.||..|.||:|||.
 Frog   230 GVKSTGKVVYFTATFPYLMLIVLLIRGVSLPGALTGIQFYLYPDLSRLQDPQVWMDAGTQIFFSY 294

  Fly   270 AICFGTLITYASYNNFNRNVYNDIVIITTMDSCSSIIAGCITFGILGNLARETGNPDIGSVVKGG 334
            |||.|.|....|||.:|.|.|.|.|.:..::|.:|.:||...|.|||.:|.|.| ..|..|.:.|
 Frog   295 AICLGCLTALGSYNKYNNNCYRDCVALCFLNSGTSFVAGFAIFSILGFMAEEQG-VHISDVAESG 358

  Fly   335 AGLAFISYPEAIAKFEYVPQMFAVLFFLMLFVLGIGSTVGMGSCILRVIRDQFGLRSPPIWK--- 396
            .|||||:||.|::...:.| ::|..||.|:.:||:.|.......::..:.|.:    |.|::   
 Frog   359 PGLAFIAYPRAVSMMPFSP-LWACFFFFMVILLGLDSQFVCVESLVTAVVDMY----PTIFRKKN 418

  Fly   397 ----LASGLTVLGFSVSIVYMTPGGQFILNLVDFYGVS-FTALILAIGELVAVAWIYGVNRFCED 456
                |..|::::.|.|.::.:|.||.::..|.|:|..| ...|.:||.|.:.|.|:||.:.|.:.
 Frog   419 RRELLILGVSMISFLVGLIMLTEGGMYVFQLFDYYAASGMCLLFVAIFETLCVGWVYGADNFYDK 483

  Fly   457 IKFMMGIETGWYWRLCWRFITPGLMTAVLIYMLLDMSALEY-KGVGYPTLAHVFGCFLATLGLIQ 520
            ::.|:|.......:.||.|:||.:..|..::.|:..:.|.| |...||......|..||...::.
 Frog   484 VEHMIGYRPTGIIKYCWLFVTPAVCMATFLFSLVKYTPLTYNKHYVYPWWGDAIGWLLALSSMVC 548

  Fly   521 LPGWAIYAIYKKRGHNGSFWQRIRAACKP 549
            :|.|   ..||.....||..:|.|....|
 Frog   549 IPLW---VGYKLSTIKGSLMERFRQLTFP 574

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ListNP_611364.2 SLC6sbd 19..489 CDD:271359 181/486 (37%)
slc6a13NP_001072913.1 SLC5-6-like_sbd 37..579 CDD:382020 199/549 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

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