DRSC/TRiP Functional Genomics Resources

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Protein Alignment List and slc6a1a

DIOPT Version :9

Sequence 1:NP_611364.2 Gene:List / 37157 FlyBaseID:FBgn0034381 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_001038752.2 Gene:slc6a1a / 692318 ZFINID:ZDB-GENE-060519-23 Length:679 Species:Danio rerio


Alignment Length:571 Identity:189/571 - (33%)
Similarity:310/571 - (54%) Gaps:34/571 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTQLEISKKSEKPAEKPA------------EQWGNGLEFLFSCISLSVGLGNIWRFPYIAFQNGG 53
            :|:|.....::||..:.|            |.||...:||.||:..::||||:|||||:..:|||
Zfish    14 VTELNEITTNDKPKTEDAKPEKNKKDIPDRETWGGKFDFLLSCVGYAIGLGNVWRFPYLCGKNGG 78

  Fly    54 GTFVIPYLIALLVIGRPVYYLEISLGQFTGRGVVKAFDMAPLLKGVALGQVLATAASITYYSSIM 118
            |.|:|||.:.|:..|.|:::||.:|||:|..|.:..:.:||:.|||.|...:.:.....||..|:
Zfish    79 GAFLIPYFLTLIFAGVPLFFLECALGQYTSIGGLGVWKLAPMFKGVGLAAAVLSFWLNIYYIVII 143

  Fly   119 ALTLRFWLASFGSELPWSRCWESWGTD-CHDGNAQNSSGKMSPAQLYFEREILHEVPNIDNGLSL 182
            |..|.:...||.::|||..|...|.|| |:...:...:..::.|.:.|....:|:   :.:||..
Zfish   144 AWALYYLYNSFTTDLPWKSCNNPWNTDRCYTNYSIVDTTNLTSAVMEFWERNVHQ---MTDGLEK 205

  Fly   183 P---NWQLVACLAIAWLVIGGVLIRGIKSSGKAAYFLGVFPYVVLLILLLRAVTLPGAIDGIIYF 244
            |   ...|...|||||:::...:.:|:..:||..||...:||.:|.||.:|.||||||.:||:::
Zfish   206 PGEIRVPLAITLAIAWVLVYFCIWKGVSWTGKVVYFSATYPYFMLFILFIRGVTLPGAKEGILFY 270

  Fly   245 FKPQWRELLNPLVWYAAVTQVFFSLAICFGTLITYASYNNFNRNVYNDIVIITTMDSCSSIIAGC 309
            ..|.:.:|....||..|.||:|||..:..|:||...|||.||.|||.|.:|:..::|.:|:.||.
Zfish   271 ITPDFEKLKESEVWLDAATQIFFSYGLGLGSLIALGSYNPFNNNVYRDSIIVCCINSFTSMFAGF 335

  Fly   310 ITFGILGNLARETGNPDIGSVVKGGAGLAFISYPEAIAKFEYVPQMFAVLFFLMLFVLGIGSTVG 374
            :.|.|:|.::..|..| |..|...|.||||::||||:.:....| ::|:|||.||.:|||.|...
Zfish   336 VIFSIVGFMSHVTKRP-IADVAASGPGLAFLAYPEAVTQLPVSP-LWAILFFSMLLMLGIDSQFC 398

  Fly   375 MGSCILRVIRDQFGLRSPPIWK-----LASGLTVLGFSVSIVYMTPGGQFILNLVDFYGVS-FTA 433
            .....:..:.|:|    |.:.:     ..:.:.|:.:::.:..:|.||.::..|.|:|..| ...
Zfish   399 TVEGFITALVDEF----PRLLRKRREIFIACVCVVSYAIGLSNITQGGLYVFKLFDYYSASGMCL 459

  Fly   434 LILAIGELVAVAWIYGVNRFCEDIKFMMGIETGWYWRLCWRFITPGLMTAVLIYMLLDMSALEYK 498
            |.|...|.::::|.||||:|.::|:.|:|.:...:|:|||.|.||.::..|.::..:.|..|...
Zfish   460 LFLVFFECISISWCYGVNKFYDNIQEMIGYKPCIWWKLCWVFFTPLVVAGVFLFSAVQMVPLTMN 524

  Fly   499 GVGYPTLAHVFGCFLATLGLIQLPGWAIYAIYKKRGHNGSFWQRIRAACKP 549
            ...:|......|..:|...::.:||:..|.....:   |::.:|||...:|
Zfish   525 NYVFPKWGQGVGWLMALSSMVLIPGYMGYMFLNLK---GTYKERIRIMLQP 572

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ListNP_611364.2 SLC6sbd 19..489 CDD:271359 171/479 (36%)
slc6a1aNP_001038752.2 SLC5-6-like_sbd 2..588 CDD:294310 189/571 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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