DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment List and SLC6A1

DIOPT Version :9

Sequence 1:NP_611364.2 Gene:List / 37157 FlyBaseID:FBgn0034381 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_001335179.1 Gene:SLC6A1 / 6529 HGNCID:11042 Length:599 Species:Homo sapiens


Alignment Length:560 Identity:195/560 - (34%)
Similarity:316/560 - (56%) Gaps:29/560 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 ISKKSEKPAEKP-AEQWGNGLEFLFSCISLSVGLGNIWRFPYIAFQNGGGTFVIPYLIALLVIGR 69
            :.|..:|.|:.| .:.|....:||.||:..::||||:|||||:..:||||.|:|||.:.|:..|.
Human    31 VVKVQKKAADLPDRDTWKGRFDFLMSCVGYAIGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGV 95

  Fly    70 PVYYLEISLGQFTGRGVVKAFDMAPLLKGVALGQVLATAASITYYSSIMALTLRFWLASFGSELP 134
            |::.||.||||:|..|.:..:.:||:.|||.|...:.:.....||..|::..:.:...||.:.||
Human    96 PLFLLECSLGQYTSIGGLGVWKLAPMFKGVGLAAAVLSFWLNIYYIVIISWAIYYLYNSFTTTLP 160

  Fly   135 WSRCWESWGTD-CHDGNAQNSSGKMSPAQLYFEREILHEVPNIDNGLSLP---NWQLVACLAIAW 195
            |.:|...|.|| |....:..::..|:.|.:.|....:|:   :.:||..|   .|.|...|||||
Human   161 WKQCDNPWNTDRCFSNYSMVNTTNMTSAVVEFWERNMHQ---MTDGLDKPGQIRWPLAITLAIAW 222

  Fly   196 LVIGGVLIRGIKSSGKAAYFLGVFPYVVLLILLLRAVTLPGAIDGIIYFFKPQWRELLNPLVWYA 260
            :::...:.:|:..:||..||...:||::|:||..|.||||||.:||:::..|.:|:|.:..||..
Human   223 ILVYFCIWKGVGWTGKVVYFSATYPYIMLIILFFRGVTLPGAKEGILFYITPNFRKLSDSEVWLD 287

  Fly   261 AVTQVFFSLAICFGTLITYASYNNFNRNVYNDIVIITTMDSCSSIIAGCITFGILGNLARETGNP 325
            |.||:|||..:..|:||...|||:|:.|||.|.:|:..::||:|:.||.:.|.|:|.:|..| ..
Human   288 AATQIFFSYGLGLGSLIALGSYNSFHNNVYRDSIIVCCINSCTSMFAGFVIFSIVGFMAHVT-KR 351

  Fly   326 DIGSVVKGGAGLAFISYPEAIAKFEYVPQMFAVLFFLMLFVLGIGS---TV-GMGSCIL----RV 382
            .|..|...|.||||::||||:.:....| ::|:|||.||.:|||.|   || |..:.::    |:
Human   352 SIADVAASGPGLAFLAYPEAVTQLPISP-LWAILFFSMLLMLGIDSQFCTVEGFITALVDEYPRL 415

  Fly   383 IRDQFGLRSPPIWKLASGLTVLGFSVSIVYMTPGGQFILNLVDFYGVS-FTALILAIGELVAVAW 446
            :|::..|       ..:.:.::.:.:.:..:|.||.::..|.|:|..| .:.|.|...|.|:::|
Human   416 LRNRREL-------FIAAVCIISYLIGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISW 473

  Fly   447 IYGVNRFCEDIKFMMGIETGWYWRLCWRFITPGLMTAVLIYMLLDMSALEYKGVGYPTLAHVFGC 511
            .||||||.::|:.|:|.....:|:|||.|.||.::..|.|:..:.|:.|......:|......|.
Human   474 FYGVNRFYDNIQEMVGSRPCIWWKLCWSFFTPIIVAGVFIFSAVQMTPLTMGNYVFPKWGQGVGW 538

  Fly   512 FLATLGLIQLPGWAIYAIYKKRGHNGSFWQRIRAACKPSD 551
            .:|...::.:||:..|.....:   ||..|||:...:||:
Human   539 LMALSSMVLIPGYMAYMFLTLK---GSLKQRIQVMVQPSE 575

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ListNP_611364.2 SLC6sbd 19..489 CDD:271359 176/482 (37%)
SLC6A1NP_001335179.1 SLC6sbd_GAT1 2..599 CDD:212075 195/560 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 577..599
PDZ-binding 597..599
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.820

Return to query results.
Submit another query.