DRSC/TRiP Functional Genomics Resources

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Protein Alignment List and Slc6a17

DIOPT Version :9

Sequence 1:NP_611364.2 Gene:List / 37157 FlyBaseID:FBgn0034381 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_001028251.1 Gene:Slc6a17 / 613226 RGDID:1587185 Length:727 Species:Rattus norvegicus


Alignment Length:595 Identity:173/595 - (29%)
Similarity:295/595 - (49%) Gaps:98/595 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 EISKKSEKPAEKPAEQWGNGLEFLFSCISLSVGLGNIWRFPYIAFQNGGGTFVIPYLIALLVIGR 69
            :::::.....::||  |.:.|:::.:.|..||||||||||||:..:||||.:::|||:.|::||.
  Rat    49 KVAEEELDAEDRPA--WNSKLQYILAQIGFSVGLGNIWRFPYLCQKNGGGAYLVPYLVLLIIIGI 111

  Fly    70 PVYYLEISLGQFTGRGVVKAFD-MAPLLKGVALGQVLATAASITYYSSIMALTLRFWLASFGSEL 133
            |:::||:::||...||.:..:. :.|.|.|:.....:.......||:.|:..::.::..||...|
  Rat   112 PLFFLELAVGQRIRRGSIGVWHYVCPRLGGIGFSSCIVCLFVGLYYNVIIGWSVFYFFKSFQYPL 176

  Fly   134 PWSRCWESWGTDCHDGN---AQNSSGKMSPAQLYFEREILHEVPNIDNGLSLP---NWQLVACLA 192
            |||.|     ....:|.   .:....|.|....::.||.|    :|.|.:|..   ||::..||.
  Rat   177 PWSEC-----PVIRNGTVAVVEPECEKSSATTYFWYREAL----DISNSISESGGLNWKMTVCLL 232

  Fly   193 IAWLVIGGVLIRGIKSSGKAAYFLGVFPYVVLLILLLRAVTLPGAIDGIIYFFKPQWRELLNPLV 257
            :||.::|..:::||:||||..||..:||||||...|:|.:.|.||:|||::.|.|:..::|:|.|
  Rat   233 VAWSIVGMAVVKGIQSSGKVMYFSSLFPYVVLACFLVRGLLLRGAVDGILHMFTPKLDKMLDPQV 297

  Fly   258 WYAAVTQVFFSLAICFGTLITYASYNNFNRNVYNDIVIITTMDSCSSIIAGCITFGILG------ 316
            |..|.|||||:|.:.||.:|.::|||..:.|.:.|..:::.::..:|::|..:.|.:||      
  Rat   298 WREAATQVFFALGLGFGGVIAFSSYNKQDNNCHFDAALVSFINFFTSVLATLVVFAVLGFKANIM 362

  Fly   317 -------------------NLARETGNPDIG----------------SVVK-------------- 332
                               .|:|:...|.:.                ..||              
  Rat   363 NEKCVVENAEKILGYLNSNVLSRDLIPPHVNFSHLTTKDYSEMYNVIMTVKEKQFSALGLDPCLL 427

  Fly   333 --------GGAGLAFISYPEAIAKFEYVPQMFAVLFFLMLFVLGIGSTVGMGSCILRVIRDQFGL 389
                    .|.|||||::.||:..|...| .::|:|||||..||:||.:|..:.|...|.|.|.:
  Rat   428 EDELDKSVQGTGLAFIAFTEAMTHFPASP-FWSVMFFLMLINLGLGSMIGTMAGITTPIIDTFKV 491

  Fly   390 RSPPIWKLASGLTVLGFSVSIVYMTPGGQFILNLVDFYGVSFTALILAIGELVAVAWIYGVNRFC 454
               |......|..|..|.|.::::...|.:.:.:.|.|..:....::.|.|.:|||||||..:|.
  Rat   492 ---PKEMFTVGCCVFAFFVGLLFVQRSGNYFVTMFDDYSATLPLTVIVILENIAVAWIYGTKKFM 553

  Fly   455 EDIKFMMGIETGWYWRLCWRFITPGLMTAVLIYMLLDMSALEYKGVGYPTLAHVFGCFL---ATL 516
            :::..|:|.....::...|:|::|      |...:|..:::...||..|.    :..::   |..
  Rat   554 QELTEMLGFRPYRFYFYMWKFVSP------LCMAVLTTASIIQLGVSPPG----YSAWIKEEAAE 608

  Fly   517 GLIQLPGWAI 526
            ..:..|.||:
  Rat   609 RYLYFPNWAM 618

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ListNP_611364.2 SLC6sbd 19..489 CDD:271359 163/539 (30%)
Slc6a17NP_001028251.1 SLC6sbd_NTT4 60..648 CDD:271403 173/584 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 680..727
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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