DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment List and Gat

DIOPT Version :9

Sequence 1:NP_611364.2 Gene:List / 37157 FlyBaseID:FBgn0034381 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_651930.2 Gene:Gat / 43805 FlyBaseID:FBgn0039915 Length:636 Species:Drosophila melanogaster


Alignment Length:582 Identity:186/582 - (31%)
Similarity:307/582 - (52%) Gaps:51/582 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 TQLEISKKSE--KPAEKPAE-QWGNGLEFLFSCISLSVGLGNIWRFPYIAFQNGGGTFVIPYLIA 63
            |..:.|.|.:  |..:.|.. .|.:.::|:.|.:.|::||||:|||||:.::||||.|::||:|.
  Fly    39 TTTDTSNKQQLVKIEQLPDRGSWSSKMDFILSVVGLAIGLGNVWRFPYLCYKNGGGAFILPYIIT 103

  Fly    64 LLVIGRPVYYLEISLGQFTGRGVVKAFDMAPLLKGVALGQVLATAASITYYSSIMALTLRFWLAS 128
            |.:.|.|::::|::|||....|.:..|.:||:.||:.....:.:.....||..|:|..:.::..|
  Fly   104 LFLAGIPMFFMELALGQMLTIGGLGVFKIAPIFKGIGYAAAVMSCWMNVYYIVILAWAVFYFFMS 168

  Fly   129 FGSELPWSRCWESWGT------------DCHDGNAQNSSGKM--------------SPAQLYFER 167
            ..:::||..|...|.|            .|.|.....::.|:              .|.:.::||
  Fly   169 MRADVPWRTCNNWWNTVNCVSQYERKNLHCWDKIINGTTQKVCSVSALNITSLELTDPVKEFWER 233

  Fly   168 ---EILHEVPNIDNGLSLPNWQLVACLAIAWLVIGGVLIRGIKSSGKAAYFLGVFPYVVLLILLL 229
               :|.|.:..|.|    ..|:|...|.:.|::....:.:|:|.:||..||..:||||:|.|||:
  Fly   234 RALQISHGIEEIGN----IRWELAGTLLLVWILCYFCIWKGVKWTGKVVYFTALFPYVLLTILLV 294

  Fly   230 RAVTLPGAIDGIIYFFKPQWRELLNPLVWYAAVTQVFFSLAICFGTLITYASYNNFNRNVYNDIV 294
            |.:|||||::||.::..|.:.:|.|..||..||||:|||..:..|||:...|||.|..|||.|.:
  Fly   295 RGITLPGALEGIKFYIIPNFSKLTNSEVWIDAVTQIFFSYGLGLGTLVALGSYNKFTNNVYKDAL 359

  Fly   295 IITTMDSCSSIIAGCITFGILGNLARETGNPDIGSVVKGGAGLAFISYPEAIAKFEYVPQMFAVL 359
            |:.|::|.:|:.||.:.|.::|.:|.|...| :..|...|.||||:.||.|:.:....| |::.|
  Fly   360 IVCTVNSSTSMFAGFVIFSVIGFMAHEQQRP-VADVAASGPGLAFLVYPSAVLQLPGSP-MWSCL 422

  Fly   360 FFLMLFVLGIGSTVGMGSCILRVIRDQFGLRSPPIWKLASGLTV-----LGFSVSIVYMTPGGQF 419
            ||.||.::|:.|........:..|.|::    |.:.:....:.:     |.:.|.:..:|.||.:
  Fly   423 FFFMLLLIGLDSQFCTMEGFITAIIDEW----PQLLRKRKEIFIAIVCALSYLVGLTCITQGGMY 483

  Fly   420 ILNLVDFYGVS-FTALILAIGELVAVAWIYGVNRFCEDIKFMMGIETGWYWRLCWRFITPGLMTA 483
            |..::|.|.|| |..|.|...|.|:::|.|||:||.:.||.|:|.....:|:.||...||.:...
  Fly   484 IFQILDSYAVSGFCLLWLIFFECVSISWCYGVDRFYDGIKDMIGYYPTVWWKFCWCVTTPAICLG 548

  Fly   484 VLIYMLLDMSALEYKGVGYPTLAHVFGCFLATLGLIQLPGWAIYAIYKKRGHNGSFWQRIRA 545
            |..:.::..:.::|....||..||.||.|.|...::.:|   :|..:..:...|...::|||
  Fly   549 VFFFNIVQWTPVKYLDYSYPWWAHAFGWFTALSSMLYIP---LYMFWLWKRTPGELSEKIRA 607

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ListNP_611364.2 SLC6sbd 19..489 CDD:271359 166/505 (33%)
GatNP_651930.2 SLC6sbd-TauT-like 58..611 CDD:271387 181/563 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45440714
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11616
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.850

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