DRSC/TRiP Functional Genomics Resources

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Protein Alignment List and Slc6a4

DIOPT Version :10

Sequence 1:NP_611364.2 Gene:List / 37157 FlyBaseID:FBgn0034381 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_037166.2 Gene:Slc6a4 / 25553 RGDID:3714 Length:630 Species:Rattus norvegicus


Alignment Length:548 Identity:196/548 - (35%)
Similarity:306/548 - (55%) Gaps:30/548 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 EQWGNGLEFLFSCISLSVGLGNIWRFPYIAFQNGGGTFVIPYLIALLVIGRPVYYLEISLGQFTG 83
            |.||..::||.|.|..:|.||||||||||.:|||||.|::||.|..:..|.|::|:|::|||:..
  Rat    80 ETWGKKMDFLLSVIGYAVDLGNIWRFPYICYQNGGGAFLLPYTIMAIFGGIPLFYMELALGQYHR 144

  Fly    84 RGVVKAF-DMAPLLKGVALGQVLATAASITYYSSIMALTLRFWLASFGSELPWSRCWESWGT-DC 146
            .|.:..: .:.|:.||:.....:......:||::|:|..|.:.::|....|||:.|..||.| :|
  Rat   145 NGCISIWRKICPIFKGIGYAICIIAFYIASYYNTIIAWALYYLISSLTDRLPWTSCTNSWNTGNC 209

  Fly   147 HDGNAQN----SSGKMSPAQLYFEREIL--HEVPNIDNGLSLPNWQLVACLAIAWLVIGGVLIRG 205
            .:..||:    :....|||:.::.|.:|  |:...:.: |...:|||..|:.:.:.||...:.:|
  Rat   210 TNYFAQDNITWTLHSTSPAEEFYLRHVLQIHQSKGLQD-LGTISWQLTLCIVLIFTVIYFSIWKG 273

  Fly   206 IKSSGKAAYFLGVFPYVVLLILLLRAVTLPGAIDGIIYFFKPQWRELLNPLVWYAAVTQVFFSLA 270
            :|:|||..:....|||:||.:||:|..|||||..|::::.||.|::||...||..|..|:||||.
  Rat   274 VKTSGKVVWVTATFPYIVLSVLLVRGATLPGAWRGVVFYLKPNWQKLLETGVWVDAAAQIFFSLG 338

  Fly   271 ICFGTLITYASYNNFNRNVYNDIVIITTMDSCSSIIAGCITFGILGNLARETGNPDIGSVVK-GG 334
            ..||.|:.:||||.||.|.|.|.::.:.::..:|.::|.:.|.:||.:| |..|.|:..|.| .|
  Rat   339 PGFGVLLAFASYNKFNNNCYQDALVTSVVNCMTSFVSGFVIFTVLGYMA-EMRNEDVSEVAKDAG 402

  Fly   335 AGLAFISYPEAIAKFEYVPQMFAVLFFLMLFVLGIGSTVGMGSCILRVIRDQFGLRSPPIWK--- 396
            ..|.||:|.||||... ....||::|||||..||:.||......::..:.|:|    |.||.   
  Rat   403 PSLLFITYAEAIANMP-ASTFFAIIFFLMLITLGLDSTFAGLEGVITAVLDEF----PHIWAKRR 462

  Fly   397 ----LASGLT-VLGFSVSIVYMTPGGQFILNLVDFYGVSFTALILAIGELVAVAWIYGVNRFCED 456
                |...:| |||   |::.:|.||.:::.|::.|......|.:|:.|.|||:|.||:.:||.|
  Rat   463 EWFVLIVVITCVLG---SLLTLTSGGAYVVTLLEEYATGPAVLTVALIEAVAVSWFYGITQFCSD 524

  Fly   457 IKFMMGIETGWYWRLCWRFITPGLMTAVLIYMLLDMSALEYKGVGYPTLAHVFGCFLATLGLIQL 521
            :|.|:|...||:||:||..|:|..:..::...|:....|......||..:.|.|..:....:|.:
  Rat   525 VKEMLGFSPGWFWRICWVAISPLFLLFIICSFLMSPPQLRLFQYNYPHWSIVLGYCIGMSSVICI 589

  Fly   522 PGWAIYAIYKKRGHNGSFWQRIRAACKP 549
            |   .|.||:.....|:..:||..:..|
  Rat   590 P---TYIIYRLISTPGTLKERIIKSITP 614

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ListNP_611364.2 SLC6sbd 19..489 CDD:271359 181/486 (37%)
Slc6a4NP_037166.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 23..60
5HT_transport_N 24..64 CDD:397524
SLC6sbd_SERT 79..615 CDD:271399 196/548 (36%)
Interaction with RAB4A. /evidence=ECO:0000250 616..624
Blue background indicates that the domain is not in the aligned region.

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