DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment List and snf-10

DIOPT Version :9

Sequence 1:NP_611364.2 Gene:List / 37157 FlyBaseID:FBgn0034381 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_505682.2 Gene:snf-10 / 191769 WormBaseID:WBGene00004909 Length:673 Species:Caenorhabditis elegans


Alignment Length:653 Identity:143/653 - (21%)
Similarity:247/653 - (37%) Gaps:159/653 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTQLEISKKSEKPAEKPAEQWGNGLEFLFSCISLSVGLGNIWRFPYIAFQNG--GGTFVIPYLIA 63
            :..:.:..|.|.|.      |.:..|.:.:.:|.....||||.|||:.   |  ||.|...:...
 Worm    66 LENIGLDTKMEGPT------WTSKWEAITATLSFVTCSGNIWFFPYLC---GYYGGWFPYQFTFC 121

  Fly    64 LLVIGRPVYYLEISLGQFTGRGVVKAFD-MAPLLKGVALGQVLATAASITYYSSIMALTLRFWL- 126
            .:.|..|:.|||.:|||:.....:..|. |||.:.|::.|        :.:......::|..|. 
 Worm   122 YVFIAVPLLYLETALGQYASASPLSVFSRMAPAMAGLSAG--------MCFIMVFRTISLSVWAI 178

  Fly   127 ----------ASFGSELPWSRCWES----------------W---GTD--CHD---------GNA 151
                      .|..|..||..|.||                |   |:|  |.:         |..
 Worm   179 YDLTIFTHASQSIWSTSPWESCQESQSGDYCVNYKLSSKCTWIQPGSDKECDEYQEMLIATRGFQ 243

  Fly   152 QNSSGKMSPAQ-LYFEREILHEVPNIDNGLSLPNWQLVACLAIAWLVIGGVLIRGIKSSGKAAYF 215
            |..|..||... |.::|.|..      |....|:...:.|....|::||.:.|.|.|..|:.   
 Worm   244 QRKSPFMSFVHGLMYKRSITM------NDWEPPSVTSIICAVCLWIIIGIISIGGSKVLGRT--- 299

  Fly   216 LGVFPYVVLLI----LLLRAVTLPGAIDGIIYFF------KPQWRELLNPLVWYAAVTQVFFSLA 270
             |:....:||:    ||...::|....:....||      :.:|..:.:   |..|......:|.
 Worm   300 -GIVALTLLLVGTIMLLSYGMSLNDTTNVFTAFFYQSEGYEDKWMWVWS---WADAAAHALRALN 360

  Fly   271 ICFGTLITYASYNNFNRNVYNDIVIITTMDSCSSIIAGCITFGILGNLARETGNPDIGSVVKGGA 335
            :..|.:..:||.|||:..::.|:::|:.:.....|..|.::|..:..:.| ...||:.:..:...
 Worm   361 VGCGGIQKFASLNNFHNKIHRDVLLISIVSFVFYICTGLLSFMFMAEIGR-LYYPDLEASERIQL 424

  Fly   336 GLAFISYPEAIAKFEYVPQMFAVLFFLMLFVLGIGSTVGMGSCI----------LRVIRDQFGLR 390
            ....:.....|::......|.::..||....|...|..|:.|.|          |...|.::| :
 Worm   425 YATPVMIESVISEILTNSSMGSIWVFLFWLTLAACSIQGISSYIWVISSMIVERLNGSRRKYG-K 488

  Fly   391 SPPIWK----LASGLTVLGFSVSIVYMTPGGQFILNLVDFYGVSFTALILAIGELVAVAWIYGVN 451
            :...|.    :.:.::|.|...|:.::..||..:::.::.: .|:..:.:|..|::.|:::||..
 Worm   489 ALASWHKRAIILAIMSVTGLISSLPFLGNGGINLMSSIETF-ASYGTIFIAFVEVITVSYVYGFK 552

  Fly   452 RFCEDIKFMMGIE--TGWYWRLCWRFITPGLMTAVLIYMLLDMSALEYKGVGYPTLAHVFGCFLA 514
            ||..:|:.|:|..  ...:|.|.|..|:|.|:..                        .|||.:|
 Worm   553 RFSVNIRAMIGGHGPPNVFWWLNWLVISPILLIV------------------------TFGCIVA 593

  Fly   515 TLG------------------LIQLPGWAIYAI-------YKKRGHNGSFWQRIRAACKPSDTWG 554
            |.|                  |:.:|  .|:.|       |.:|.:...|...|||    :..||
 Worm   594 TFGQKKAFNENSIVSDPIGYSLLVMP--CIFVILYFLRDEYDRRKNMEPFVVMIRA----TGDWG 652

  Fly   555 PAN 557
            |.|
 Worm   653 PMN 655

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ListNP_611364.2 SLC6sbd 19..489 CDD:271359 120/540 (22%)
snf-10NP_505682.2 SNF 78..628 CDD:264495 131/608 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11616
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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