DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment List and snf-3

DIOPT Version :9

Sequence 1:NP_611364.2 Gene:List / 37157 FlyBaseID:FBgn0034381 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_493910.2 Gene:snf-3 / 173493 WormBaseID:WBGene00004902 Length:600 Species:Caenorhabditis elegans


Alignment Length:573 Identity:185/573 - (32%)
Similarity:300/573 - (52%) Gaps:49/573 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 QLEISKKSEKPAEKPAEQWGNGLEFLFSCISLSVGLGNIWRFPYIAFQNGGGTFVIPYLIALLVI 67
            :||.|:.||:|   ...||....:||.|.::.:|||||:|||||:.::||||:|::.|:|...:.
 Worm    18 ELEQSQHSEEP---DRGQWTGKFDFLMSMVAYAVGLGNVWRFPYLCYKNGGGSFLVVYMIFFCLA 79

  Fly    68 GRPVYYLEISLGQFTGRGVVKAFDMAPLLKGVALGQVLATAASITYYSSIMALTLRFWLASFGSE 132
            ..|::.:|:::||:..:|.::.:.|.||.:||.:|.|:.....|.|:..|:|..:.:.::|....
 Worm    80 AVPIFLMEVTVGQYLQKGAMEMWLMCPLFRGVGIGNVVIAFMCIAYFCVIVAWAMFYMISSIAWV 144

  Fly   133 LPWSRCWESWG-TDCHDGN-------------AQNSSGKMSPAQLYFEREILHEVPNID--NGLS 181
            .||..|...|. ..|..|.             |.......:..:.::|:.:||:..:|.  .|: 
 Worm   145 FPWETCNNYWNDATCVTGKENFTELARIKALVASAGGHTQTSVEQFWEKRVLHDTGDISEFGGI- 208

  Fly   182 LPNWQLVACLAIAWLVIGGVLIRGIKSSGKAAYFLGVFPYVVLLILLLRAVTLPGAIDGIIYFFK 246
              .|:|...:|.|||::...|.:||..:.|..||..:||||::.|||:|.:||.||..||.::.|
 Worm   209 --QWELFFIMAAAWLIVYFALWKGITQARKFVYFCALFPYVLIFILLIRGLTLEGAGTGIYFYLK 271

  Fly   247 PQWRELLNPLVWYAAVTQVFFSLAICFGTLITYASYNNFNRNVYNDIVIITTMDSCSSIIAGCIT 311
            |....||:..||..|.||||:|..:.||.||...|:|.||.|.:.|.:.:..::.|:||.||...
 Worm   272 PNATRLLDTAVWKDAGTQVFYSYGVGFGALIALGSHNKFNHNCFKDAITMCFINGCTSITAGFAV 336

  Fly   312 FGILGNLARETGNPDIGSVVKGGAGLAFISYPEAIAKFEYVPQMFAVLFFLMLFVLGIGSTVGMG 376
            |.|||.:: .....||..:||.|.||||::|||..:... :.|:||||||||:.:||:.|.|.|.
 Worm   337 FSILGYMS-HVAQKDISEIVKPGVGLAFLAYPEVASNLP-MKQVFAVLFFLMITILGLDSQVCMM 399

  Fly   377 SCILRVIRDQFGLRSPPIW----KLASGLTVL-GFSVSIVYMTPGGQFILNLVDFYGVSFTALIL 436
            ..:...:.|.|     ||.    |.:.|:..| .|.:.|..:|..|...|.|.|.||.|..||:.
 Worm   400 EGLFTALEDAF-----PILRKYKKQSLGIFCLFFFCIGIPMVTHSGSHWLTLFDAYGASGYALLF 459

  Fly   437 AI-GELVAVAWIYGVNRFCEDIKFMMGIETGWYWRLCWRFITPGLMTAVLIYMLLDMSALEY-KG 499
            .: .|:|.:|:.:|.:...:.:..|:|:.........|:|..|.....:.::.::....::| .|
 Worm   460 VVFFEVVGLAYGFGAHNIRKALHEMIGVTLPKGIEYVWKFCAPATSLVLFVFCVVYYHPVKYPDG 524

  Fly   500 VGYPTLAHVFGCFLATLGLIQLPGWAIYAIYKKRGH-------------NGSF 539
            ..:|..|:.||.||::..::.:||:|||.::....|             :|||
 Worm   525 KDFPFWANAFGWFLSSCSMVVIPGYAIYYLFFTNKHLTLKERVRKGLNLDGSF 577

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ListNP_611364.2 SLC6sbd 19..489 CDD:271359 162/491 (33%)
snf-3NP_493910.2 SLC6sbd-TauT-like 30..571 CDD:271387 176/550 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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