DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment List and snf-2

DIOPT Version :9

Sequence 1:NP_611364.2 Gene:List / 37157 FlyBaseID:FBgn0034381 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_492396.2 Gene:snf-2 / 172701 WormBaseID:WBGene00004901 Length:746 Species:Caenorhabditis elegans


Alignment Length:633 Identity:187/633 - (29%)
Similarity:297/633 - (46%) Gaps:103/633 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SKKSEKPA---EKPAEQWGNGLEFLFSCISLSVGLGNIWRFPYIAFQNGGGTFVIPYLIALLVIG 68
            ::|:.:.|   |....|...|:|.|.|.:..::|||||||||.:|:||||.:|:|.|:|...|..
 Worm    94 ARKAYRDAIQVENTDRQAFRGIESLLSSLGQAIGLGNIWRFPTVAYQNGGTSFLIVYIICAFVFA 158

  Fly    69 RPVYYLEISLGQFTGRGVVKAF-DMAPLLKGVALGQVLATAASITYYSSIMALTLR-----FWLA 127
            .|..::|.:|||:..:.....| .:.|.|:||.....:..|....||..:::..:.     |::.
 Worm   159 VPAIHMEFALGQYAAKSPPAVFRRIMPALEGVGWMTCIVGAVIGVYYMILISWIVLYIINIFYVN 223

  Fly   128 SFGSELPWSRCWESWG-TDCHDGNAQNSSGK-----------------MSPAQLYFEREILH--- 171
            :.|      ||...|. .:|:||:.|:...|                 |:|......:.||:   
 Worm   224 NMG------RCDNPWNQNNCYDGSEQSRCNKGLYSNMTANASSFLNTTMAPLMSSGSKRILYING 282

  Fly   172 ---EVPNID-----------------------NGLSLPNWQLVACLAIAWLVIGGVLIRGIKSSG 210
               :..|:.                       |.::||   ::..:|:.|::...|||||:|:.|
 Worm   283 KCQDATNMSVEVGTEQFFSKSVIRPSAGFTDFNSINLP---ILGAVALCWVIAAVVLIRGMKAIG 344

  Fly   211 KAAYFLGVFPYVVLLILLLRAVTLPGAIDGIIYFF-KPQWRELLNPLVWYAAVTQVFFSLAICFG 274
            |.:|...:.||.:::.||:..|:||||.||:.:.| :..:..|.....|.||:.|:.|||:|..|
 Worm   345 KLSYVTVILPYFIIVSLLICGVSLPGAKDGLYHLFGQTDFNYLYKRETWTAALQQICFSLSIGQG 409

  Fly   275 TLITYASYNNFNRNVYNDIVIITTMDSCSSIIAGCITFGILGNLARETG--NPDIGS---VVKGG 334
            .|:..||||....|.|.|:.||..:|:..||:.|...|..||.||.|.|  :.||.:   :||.|
 Worm   410 GLMNIASYNKKTYNWYRDVYIIVFLDTLMSILGGITVFSTLGFLAYERGINSTDIDAFNHIVKEG 474

  Fly   335 AGLAFISYPEAIAKFEYVPQMFAVLFFLMLFVLGIGSTVGMGSCILRVIRDQFGLRSPPIWKLAS 399
            ..||||.|.||||:.. ||.::..|||:|||:|||.:.|.:...:...:.|:|.......|....
 Worm   475 HALAFIVYTEAIAEMP-VPYLWYALFFIMLFLLGISTEVVIVEIVCSCLADRFRYLRERRWLTVL 538

  Fly   400 GLTVLGFSVSIVYMTPGGQFILNLVDFYGVSFTALILAIGELVAVAWIYGVNRFCEDIKFMMGIE 464
            .::.:.|.:.:|..|..|.:..::.|.|....:|........:.|.|.||.|.|.|||..|.|..
 Worm   539 SVSAVFFLLGLVMTTDAGFYWFDMFDEYSTGISATFGTAIMCMTVFWCYGTNHFREDIAVMWGEP 603

  Fly   465 TGW----------YWRLCWRFITPGLMTAVLIYMLLDMSALEYKGVG--YPTLAHVFGCFLATLG 517
            ..|          :|.|.|:|:|| :.:.:::.:.:......:||.|  ||.:....|.|:|.:.
 Worm   604 ESWLATCLGPAAYFWTLIWKFVTP-VCSLLMMGLWIWEKKYPHKGDGKIYPPVFDALGWFIAVVP 667

  Fly   518 LIQLPGWAIYAIYKKRGHN----GSF--------WQRIRAACKPSDTW 553
            .:.:||:||.|:...|..|    |:|        :.||      |:.|
 Worm   668 FLVIPGFAIAAVINTRRMNIPIRGAFMLQKQHPSYDRI------SEQW 709

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ListNP_611364.2 SLC6sbd 19..489 CDD:271359 163/538 (30%)
snf-2NP_492396.2 SLC6sbd 113..638 CDD:271359 162/535 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11616
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.920

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