DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment List and mod-5

DIOPT Version :9

Sequence 1:NP_611364.2 Gene:List / 37157 FlyBaseID:FBgn0034381 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_491095.3 Gene:mod-5 / 171879 WormBaseID:WBGene00003387 Length:671 Species:Caenorhabditis elegans


Alignment Length:550 Identity:182/550 - (33%)
Similarity:302/550 - (54%) Gaps:30/550 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 EQWGNGLEFLFSCISLSVGLGNIWRFPYIAFQNGGGTFVIPYLIALLVIGRPVYYLEISLGQFTG 83
            ::|...:|||.:.:..:|.||||||||.:.:::|||.|:|||.|.|::.|.|::|:|:.||||..
 Worm   101 DKWATKMEFLLAVVGYAVDLGNIWRFPSVCYKHGGGAFLIPYFIMLMIGGLPMFYMELVLGQFHR 165

  Fly    84 RGVVKAF-DMAPLLKGVALGQVLATAASITYYSSIMALTLRFWLAS----FGSELPWSRCWESWG 143
            .|.|..: .:.||.:|:..|..........:|::|:|..:.|.:.|    :.||:||:.|...|.
 Worm   166 SGCVSIWRKVCPLFRGIGYGICCICTFIAIFYNAIIAQAVYFAIVSLSKIWDSEVPWASCGNPWN 230

  Fly   144 TD-CHDG----NAQNSSGKMSPAQLYFEREILHEVPNIDNGLSLPN-----WQLVACLAIAWLVI 198
            |. |.|.    .::|.:...:|::.|:    |::|..:.......:     ..:..||...::::
 Worm   231 TPRCSDDLNVTISRNGTPLTTPSEEYY----LYKVLEVQKSTGFDDLGGVKTSMAVCLLAVFIMV 291

  Fly   199 GGVLIRGIKSSGKAAYFLGVFPYVVLLILLLRAVTLPGAIDGIIYFFKPQWRELLNPLVWYAAVT 263
            ...|.:|.:||||..:.....||::|.|||:|.:.||||.:|:.|:..|.:.:|.:|.||.||.|
 Worm   292 YFALWKGPQSSGKIVWVTATAPYIILSILLIRGLLLPGAKNGLYYYVTPDFEKLKDPAVWSAAAT 356

  Fly   264 QVFFSLAICFGTLITYASYNNFNRNVYNDIVIITTMDSCSSIIAGCITFGILGNLARETGNPDIG 328
            |:||||...||.|:..:|||:||.|.|.|.|..:.::..:|..:||:.|..||.::..|..| |.
 Worm   357 QIFFSLGPGFGVLLALSSYNDFNNNCYRDAVTTSIINCATSFFSGCVVFSTLGYMSLLTNKP-IN 420

  Fly   329 SVV-KGGAGLAFISYPEAIAKFEYVPQMFAVLFFLMLFVLGIGST-VGMGSCILRVIRDQFGLRS 391
            .|| :..|.|.||.||:|:|..:| ...::.:||:||..|||.|| .|:.:.|.....:...|..
 Worm   421 EVVGEHDASLIFIVYPQALATMDY-SCFWSFIFFVMLITLGIDSTFAGIEAFITGFCDESRFLSK 484

  Fly   392 PPIWKLASGLTVLGFSVSIVYMTPGGQFILNLVDFYGVSFTALILAIGELVAVAWIYGVNRFCED 456
            ...| ....:.::.:.:|...::.||||::..:|.||||.:.|.:...|::||.|.|||::|.:|
 Worm   485 NRKW-FVLVICIIYYFLSFPAISYGGQFVIPFLDEYGVSLSVLFIVTCEMIAVCWFYGVDQFSKD 548

  Fly   457 IKFMMGIETGWYWRLCWRFITPGLMTAVLIYMLLDMS--ALEYKGVGYPTLAHVFGCFLATLGLI 519
            |:.|:|...|.|||:||. .:|..::.:.|..:.:.|  .::.....:|..:.:.|.||..|.::
 Worm   549 IRAMLGFYPGIYWRVCWT-CSPVFISVIFIMTVYNSSFKPIQMASYTFPWWSVILGWFLRLLSVL 612

  Fly   520 QLPGWAIYAIYKKRGHNGSFWQRIRAACKP 549
            .:|.:||  ||...| .|:.::|.|.|..|
 Worm   613 AIPVFAI--IYLLSG-TGTLYERFRWAITP 639

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ListNP_611364.2 SLC6sbd 19..489 CDD:271359 165/486 (34%)
mod-5NP_491095.3 SLC6sbd_SERT-like 100..639 CDD:271388 181/548 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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