DRSC/TRiP Functional Genomics Resources

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Protein Alignment List and slc6a4

DIOPT Version :10

Sequence 1:NP_611364.2 Gene:List / 37157 FlyBaseID:FBgn0034381 Length:564 Species:Drosophila melanogaster
Sequence 2:XP_017946918.1 Gene:slc6a4 / 100493853 XenbaseID:XB-GENE-22062972 Length:664 Species:Xenopus tropicalis


Alignment Length:553 Identity:191/553 - (34%)
Similarity:298/553 - (53%) Gaps:44/553 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 QLEISKKSEKPAEKPAEQWGNGLEFLFSCISLSVGLGNIWRFPYIAFQNGGGTFVIPYLIALLVI 67
            |.||.::         |.|...::||.|.|..:|.|||:|||||:.:|||||.|:|||:|..:..
 Frog   107 QTEIGER---------ETWSKKIDFLLSVIGYAVDLGNVWRFPYVCYQNGGGAFLIPYVIMAVFG 162

  Fly    68 GRPVYYLEISLGQFTGRGVVKAF-DMAPLLKGVALGQVLATAASITYYSSIMALTLRFWLASFGS 131
            |.|::|:|:::||:...|.:..: .:.||.||:.....:.......||::|||..|.:.:.||.|
 Frog   163 GIPLFYMELAMGQYHRNGCISIWRKICPLFKGIGYAICMIALYVAFYYNTIMAWALYYLIFSFRS 227

  Fly   132 ELPWSRCWESWGTDCHDGNAQN---------SSGKMSPAQLYFEREIL--HEVPNIDN--GLSLP 183
            ||||:.|...|.|    ||..|         |:..:|||:.::.|.:|  |:...:.:  |:|  
 Frog   228 ELPWTSCLNEWNT----GNCTNYFQNSSVGWSNSSISPAEEFYTRLVLQIHKSKGLHDLGGIS-- 286

  Fly   184 NWQLVACLAIAWLVIGGVLIRGIKSSGKAAYFLGVFPYVVLLILLLRAVTLPGAIDGIIYFFKPQ 248
             |||..||.:.:.|:...:.:|:|:|||..:....|||:||.:||:|..|||||..|::::.:|.
 Frog   287 -WQLTLCLLLIFTVVYFSIWKGVKTSGKVVWVTATFPYIVLALLLIRGATLPGAWRGVLFYLQPD 350

  Fly   249 WRELLNPLVWYAAVTQVFFSLAICFGTLITYASYNNFNRNVYNDIVIITTMDSCSSIIAGCITFG 313
            |.:||...||..|..|:||||...||.|:.:||||.|:.|.|.|.:|.:|::..:|.::|.:.|.
 Frog   351 WEKLLTTAVWVDAAAQIFFSLGPGFGVLLAFASYNKFHNNCYQDALITSTVNCMTSFMSGLVIFT 415

  Fly   314 ILGNLARETGNPDIGSVVKG-GAGLAFISYPEAIAKFEYVPQMFAVLFFLMLFVLGIGSTVGMGS 377
            :||.:| |..|.|:..|.|. |..|.||:|.||||... ....||::|||||..||:.||.....
 Frog   416 VLGYMA-EMRNLDVSEVAKDTGPSLLFITYAEAIANMP-ASTFFAIIFFLMLITLGLDSTFAGLE 478

  Fly   378 CILRVIRDQFGLRSPPIWKLASGLTVLGFSVSIVY------MTPGGQFILNLVDFYGVSFTALIL 436
            .::..:.|:|    |.||.....|.|. ..:|:.:      :|.||.:::.|.:.|......|.:
 Frog   479 GVITAVLDEF----PHIWGKRRELFVF-LLISVCFLGALSTLTFGGAYMVKLFEEYATGPAVLTV 538

  Fly   437 AIGELVAVAWIYGVNRFCEDIKFMMGIETGWYWRLCWRFITPGLMTAVLIYMLLDMSALEYKGVG 501
            ...|.:||:|.||:|:||.|::.|:|...||:|::||..|.|..:..::...:.....|......
 Frog   539 VFLEAIAVSWFYGINQFCRDVREMLGFSPGWFWKICWVAICPLFLLFIICSFMSSPPDLRLFNYQ 603

  Fly   502 YPTLAHVFGCFLATLGLIQLPGWAIYAIYKKRG 534
            ||:...|.|..:.|...|.:|.:.:|.:....|
 Frog   604 YPSWTVVLGYCIGTSSFICVPAYMVYLLTSTPG 636

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ListNP_611364.2 SLC6sbd 19..489 CDD:271359 178/490 (36%)
slc6a4XP_017946918.1 5HT_transport_N 48..91 CDD:397524
SLC5-6-like_sbd 113..649 CDD:444915 188/547 (34%)
Blue background indicates that the domain is not in the aligned region.

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