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Protein Alignment CG15073 and prdm9

DIOPT Version :9

Sequence 1:	NP_611362.2	Gene:	CG15073 / 37155	FlyBaseID:	FBgn0034379	Length:	580	Species:	Drosophila melanogaster
Sequence 2:	NP_957196.1	Gene:	prdm9 / 393876	ZFINID:	ZDB-GENE-040426-1319	Length:	853	Species:	Danio rerio

Alignment Length:	611	Identity:	133/611 - (21%)
Similarity:	197/611 - (32%)	Gaps:	185/611 - (30%)

- Green bases have known domain annotations that are detailed below.

  Fly    58 VNDFHQFYVAVESAHRLLTERFSLKSGQDQGKVEHGEDSEQQEEEQDEDQELGLPGSE----GGS 118
            :.:..|..||.:.|....|:..: :|.|:|...::|:...|.|...:.|      .|:    .|.
Zfish   274 ITEVEQCLVASDEALSTQTQPVT-ESPQEQISTQNGQPIHQTENSDEPD------ASDIYTAAGE 331

  Fly   119 FTNE---------QFLTEVIAQQEQQTDSNPPK--------------------EQFIKEDNATVN 154
            .::|         .||.....::.|:|..:..|                    :...:|....:.
Zfish   332 ISDEIHACVDCGRSFLRSCHLKRHQRTIHSKEKPYCCSQCKKCFSQATGLKRHQHTHQEQEKNIE 396

  Fly   155 DPE--------TSATLP----------------TEQRRETRS---TAKSKAHHSL-------PPS 185
            .|:        |..||.                .|..|...|   ||:::..|:.       |..
Zfish   397 SPDRPSDIYPCTKCTLSFVAKINLHQHLKRHHHGEYLRLVESGSLTAETEEDHTEVCFDKQDPNY 461

  Fly   186 TPPEKS-NSVANKSKAKRTPCKA-----EGTPQKSKRYADYKQCMLDIDA-KISAHMRLTCDVCH 243
            .||.:. .|..|..|.:..|.|.     .|.|.|:|.        |:::. |||.    .|..|.
Zfish   462 EPPSRGRKSTKNSLKGRGCPKKVAVGRPRGRPPKNKN--------LEVEVQKISP----ICTNCE 514

  Fly   244 EGQETFLLLCKHMLQEHHRKG----------YAIC--CNKKFYKRSFLTDHIDRHADPEKFKCTQ 296
            :.......|..|.......:|          ..||  |.:.|.....|..|.........:.|..
Zfish   515 QSFSDLETLKTHQCPRRDDEGDNVEHPQEASQYICGECIRAFSNLDLLKAHECIQQGEGSYCCPH 579

  Fly   297 CDKRFADKQC-LRNHELLKHHPEEEKTFMCEQCPKRYTKQYLLDQHRVIHKERN----------- 349
            ||..| ::.| ||.||...|  .:||.:.|..|.|.:|:...|.:|:..|..|.
Zfish   580 CDLYF-NRMCNLRRHERTIH--SKEKPYCCTVCLKSFTQSSGLKRHQQSHLRRKSHRQSSALFTA 641

  Fly   350 --VVCDLCERRFPNQSLLCTHVKMAHGNY----------GTM-------CDICAQVIRGRAAFQR 395
              ..|..|...|.::..|..|::..|...          |.:       |..|.:.......|:.
Zfish   642 AIFPCAYCPFSFTDERYLYKHIRRHHPEMSLKYLSFQEGGVLSVEKPHSCSQCCKSFSTIKGFKN 706

  Fly   396 HQLEHAGVTEPKVQCDICG---SWHKNKHSLKKHVRRHNGTAA-TCDLCGKVSPNRSAMLSHQRY 456
            |.....|  |....|..||   ||.   :|||:|.|.|.|... ||..|||     |.:.|.|..
Zfish   707 HSCFKQG--EKVYLCPDCGKAFSWF---NSLKQHQRIHTGEKPYTCSQCGK-----SFVHSGQLN 761

  Fly   457 VHLTD----------------------RKHE----------CSVCNKAFKKAITLREHMTMHTGE 489
            |||..                      |:||          |..|.|:|.:..:|:.|..:|.|.
Zfish   762 VHLRTHTGEKPFLCSQCGESFRQSGDLRRHEQKHSGVRPCQCPDCGKSFSRPQSLKAHQQLHVGT 826

  Fly   490 VLYKCPHCPKTFNSNANQHTHRRKCH 515
            .|:.|..|.|:|....:...|.:|.|
Zfish   827 KLFPCTQCGKSFTRRYHLTRHHQKMH 852

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.